Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 1e-19
seq9 105 1e-17
>seq6
Length=1958011
Score = 113 bits (124), Expect = 1e-19
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620
||| |||||||||||| | | ||||||| | |||||||| || || || |||||||| |
Sbjct 63255 GCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCT 63196
Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680
|| |||| || || | ||||| |||| |||| | |||||||| | |||||||||
Sbjct 63195 GCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACCAACCCCTTCGACTTTATGGA 63136
Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
| | || ||||| || || || | ||||||||||| ||||||
Sbjct 63135 GATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGTGT 63091
>seq9
Length=1289175
Score = 105 bits (116), Expect = 1e-17
Identities = 388/597 (65%), Gaps = 18/597 (3%)
Strand=Plus/Minus
Query 297280 CCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATA 297339
|||||||||||| || || | ||| || | |||| | ||||| || | |||
Sbjct 1226950 CCAACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATA 1226891
Query 297340 ATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGT 297399
||||| || |||||||| | || || |||| || || || |||| ||||| |
Sbjct 1226890 GTACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGC 1226831
Query 297400 ATCGACGAAAACCTGTCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCG 297458
| ||| | | || ||| || ||| ||| ||||||||||| || | || |
Sbjct 1226830 GGGGTGGAAGATCGTGCGGGTCATGCGGGGGACGTTG-GTGAAAATATAACGAGGGCTGG 1226772
Query 297459 CGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA 297518
| |||||| |||||||||| | | ||||||||| || | ||| | |||||
Sbjct 1226771 CCGCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGA 1226712
Query 297519 TGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTT 297578
|||| ||||| |||||||| | ||| || || || || || || | ||||
Sbjct 1226711 TGTTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTT 1226652
Query 297579 CGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGT 297638
|||| ||||| || || | | ||| | ||||||||| | || ||| || ||||| | |
Sbjct 1226651 CGCCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTT 1226592
Query 297639 CGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAA 297696
| || | | ||||| ||| || || | || || || || ||| ||| ||||
Sbjct 1226591 CCTTCTTGAGGTTGCGTAAGAAGCAGGCGA--ACATGACCTTGCGCTGACCAGGCTTGAG 1226534
Query 297697 ACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTC 297756
|| || | ||||| || ||| || |||| | ||||| | || || ||
Sbjct 1226533 GCCGTCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTC 1226474
Query 297757 CTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTG---TGGTCAAGTTGATTTCC 297813
||||| || ||||| ||| ||| | || ||| || |||||||| | | ||
Sbjct 1226473 CTTGTTGACAAAGTCCTGAAGGGGGA---TGGTCTTAATGTCATGGTCAAGGAAAGTACC 1226417
Query 297814 TGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA 297867
|| | ||| || || || ||||||||||||||| ||||| || | |||||||||
Sbjct 1226416 AGGCTTGTACTGGCG-CAGCCACTCCTTGCGATCGTCGGCCTTCTT--CTTGTTGAA 1226363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879505427250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |