Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 113 1e-19 seq9 105 1e-17 >seq6 Length=1958011 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| |||||||||||| | | ||||||| | |||||||| || || || |||||||| | Sbjct 63255 GCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCT 63196 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||| || || | ||||| |||| |||| | |||||||| | ||||||||| Sbjct 63195 GCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACCAACCCCTTCGACTTTATGGA 63136 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || ||||| || || || | ||||||||||| |||||| Sbjct 63135 GATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGTGT 63091 >seq9 Length=1289175 Score = 105 bits (116), Expect = 1e-17 Identities = 388/597 (65%), Gaps = 18/597 (3%) Strand=Plus/Minus Query 297280 CCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATA 297339 |||||||||||| || || | ||| || | |||| | ||||| || | ||| Sbjct 1226950 CCAACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATA 1226891 Query 297340 ATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGT 297399 ||||| || |||||||| | || || |||| || || || |||| ||||| | Sbjct 1226890 GTACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGC 1226831 Query 297400 ATCGACGAAAACCTGTCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCG 297458 | ||| | | || ||| || ||| ||| ||||||||||| || | || | Sbjct 1226830 GGGGTGGAAGATCGTGCGGGTCATGCGGGGGACGTTG-GTGAAAATATAACGAGGGCTGG 1226772 Query 297459 CGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA 297518 | |||||| |||||||||| | | ||||||||| || | ||| | ||||| Sbjct 1226771 CCGCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGA 1226712 Query 297519 TGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTT 297578 |||| ||||| |||||||| | ||| || || || || || || | |||| Sbjct 1226711 TGTTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTT 1226652 Query 297579 CGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGT 297638 |||| ||||| || || | | ||| | ||||||||| | || ||| || ||||| | | Sbjct 1226651 CGCCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTT 1226592 Query 297639 CGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAA 297696 | || | | ||||| ||| || || | || || || || ||| ||| |||| Sbjct 1226591 CCTTCTTGAGGTTGCGTAAGAAGCAGGCGA--ACATGACCTTGCGCTGACCAGGCTTGAG 1226534 Query 297697 ACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTC 297756 || || | ||||| || ||| || |||| | ||||| | || || || Sbjct 1226533 GCCGTCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTC 1226474 Query 297757 CTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTG---TGGTCAAGTTGATTTCC 297813 ||||| || ||||| ||| ||| | || ||| || |||||||| | | || Sbjct 1226473 CTTGTTGACAAAGTCCTGAAGGGGGA---TGGTCTTAATGTCATGGTCAAGGAAAGTACC 1226417 Query 297814 TGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA 297867 || | ||| || || || ||||||||||||||| ||||| || | ||||||||| Sbjct 1226416 AGGCTTGTACTGGCG-CAGCCACTCCTTGCGATCGTCGGCCTTCTT--CTTGTTGAA 1226363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879505427250