Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 269 3e-67 seq6 138 1e-27 seq4 104 3e-17 >seq1 Length=6947394 Score = 269 bits (298), Expect = 3e-67 Identities = 1118/1746 (64%), Gaps = 47/1746 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| || || |||||||| || |||||||| | || | |||||||||| Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || |||| | || | | | | || ||| | || || || ||||||||| Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 1521318 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 |||||| || || || | ||||| || ||||| | || ||||| || || || Sbjct 1521319 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTG 1521378 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGAGCCACCCG---C 113832 |||| | ||| || || || |||||| ||| || | | |||||||| ||||||| | Sbjct 1521379 TAGATGGCCTTGATGTCGTCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGC 1521437 Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 |||| ||| | |||||| |||| ||||||||||| || |||| || | Sbjct 1521438 AATGAC---GAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGTCACGAAG 1521494 Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 ||| | | | ||| || || ||||| | || || | | |||| | Sbjct 1521495 GAGCCAGGGGCA--GACGACCTGGAAGTCACCTGACAGAACACGACGCGAGTAGAGCATC 1521552 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| ||||| |||||||| || || | || || | ||| ||||| |||||| Sbjct 1521553 GAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGC 1521612 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 || || || | ||| || ||| |||| ||| | | ||| || ||| || Sbjct 1521613 ATAGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTTGGCAATCTTCTCACGGAGCTCG 1521672 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130 ||||||| || | | | | | | ||| | || ||||| || | || || Sbjct 1521673 TCCCAGTTCCAGAGGTCGGTAGGAACGCGGTTCCAGAGGTCGAACTGAAGCTTGCCCTGC 1521732 Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190 ||| ||||| ||||| | | ||| | ||| | | | |||| || | | Sbjct 1521733 GAGATGGGCGAACCCTCGTACGAGGGGTAGGTGCCAGCCTCGACAGCCATCTCACACGAC 1521792 Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTC 114249 | |||||| || ||||| || || ||||| || || | || | || | | | | Sbjct 1521793 GACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGACGAG-CAGC 1521851 Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309 | || || || | | ||| || || || || ||||| ||||||||||| Sbjct 1521852 GGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCCTGGACACCGAG 1521911 Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATT 114366 |||| ||||| || | ||| || || || || || ||| ||||| || | || Sbjct 1521912 ACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC---CTCGGGGACGGGGTAGTAGTT 1521968 Query 114367 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426 | ||| || | | || || |||||||| ||||| ||||| || || ||||| | Sbjct 1521969 GCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTT 1522028 Query 114427 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 114486 | | || | || |||| | |||| | ||| || ||||| || || || || Sbjct 1522029 GAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCAAGGTT 1522088 Query 114487 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 114546 || || | ||| || | || |||||| || || || || || | || || Sbjct 1522089 GCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGA 1522148 Query 114547 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 114606 ||| ||||| |||| || || || || ||||| ||| || |||||||| ||||| Sbjct 1522149 CTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCAT 1522208 Query 114607 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTG 114665 | | || || ||||| || |||| || || || | ||||| | || | | || Sbjct 1522209 GAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCTT 1522268 Query 114666 GCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCTTCAA 114719 | ||| ||| || |||| |||| ||||||||| |||||| || |||| Sbjct 1522269 GA----TGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGCCTCAA 1522321 Query 114720 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 114779 |||| || | | || ||||| || || || | ||||| | ||| | ||| | Sbjct 1522322 ACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGT 1522381 Query 114780 GACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGAT 114839 ||| | |||| |||||||||||||||||||| ||||||||||| || ||||||| | Sbjct 1522382 CGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGT 1522441 Query 114840 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 | ||| ||| | || || | || || || || | || | ||||| | || | Sbjct 1522442 CACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGT 1522501 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACCAGCCT 114953 | |||||||| || || ||||| | || | | || ||| | | || ||| Sbjct 1522502 CGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTT--GTTG-CCTCCCT 1522558 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATT 115013 ||| || || | || || || | || | || ||||| || | ||||| | || | Sbjct 1522559 GGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGT 1522618 Query 115014 GGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACC 115071 || || || || ||| |||| | | |||| | || | |||||||| | ||| Sbjct 1522619 AACCGTTGGTACCGGCAATGTACGAACCCT--TGGCACGGATGTTGTGGATGTGGAGACC 1522676 Query 115072 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTC 115131 ||||| || || ||| ||||| || ||||| | |||| || ||||||| ||||| Sbjct 1522677 GATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTC 1522736 Query 115132 GATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 115191 ||||||||| |||| | |||| ||||||||| |||||| || || | || ||||| Sbjct 1522737 GATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACC 1522796 Query 115192 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGT 115251 ||||||||||||||| || | |||||| |||| | | ||||| | ||| || Sbjct 1522797 AGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGT 1522856 Query 115252 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTA 115311 ||| | ||| | ||||| || ||||| ||||||||||| || ||||| | ||||| Sbjct 1522857 CTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCATGTG 1522916 Query 115312 TTGGGG 115317 ||||| Sbjct 1522917 CTGGGG 1522922 >seq6 Length=1958011 Score = 138 bits (152), Expect = 1e-27 Identities = 179/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || || ||||| || ||||||||| || || Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | ||| || |||||||||||||| Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 ||||| || || ||||||| |||||||||||||| || ||||| ||| Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTTCTCGTCCGA 63545 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | ||| || |||||| | ||||| |||| ||| ||||| | | ||| || || | Sbjct 63546 GATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTCTCAATGGCGTT 63605 Query 126283 AAAGAG 126288 ||||| Sbjct 63606 GAAGAG 63611 >seq4 Length=2551142 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | |||||||| || |||||||| || || || || ||| || Sbjct 1013384 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCG 1013443 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||| || |||||||| | |||||| || || ||| || |||||||||||||| Sbjct 1013444 CGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAGAAGATG 1013503 Query 126167 CCCTCCACACACGCGAACGCAA 126188 ||||| || ||||| ||||||| Sbjct 1013504 CCCTCGACGCACGCAAACGCAA 1013525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353338657800