Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 289 3e-73 >seq1 Length=6947394 Score = 289 bits (320), Expect = 3e-73 Identities = 1109/1722 (64%), Gaps = 66/1722 (4%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || || ||| |||||||||||| || || |||| ||| || Sbjct 1522988 TACTTTGGCTTCAAGACCCTTGAGCGCTCGTACCTCCTCCGCATCGACGGCAAGGTCGCC 1522929 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || || | |||||||| | ||||| || |||||| || |||| Sbjct 1522928 GAGCGTCCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGAC 1522869 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATGGCCACCCCG 93900 || || | | ||| || |||| ||| | | || ||| ||| | || Sbjct 1522868 AAGGTCATTGAGACTTACAACCTCATGTCGGA---GCGCTACTTCACCCACGCCTCGCCT 1522812 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 ||||| |||||||| || ||||| || |||||||| ||||| ||||| | | | Sbjct 1522811 ACCCTCTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATG 1522752 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 |||| ||||| ||| ||| || | ||||| ||||||| ||| || ||||| || Sbjct 1522751 AAGGAGGACTCGATCGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAG 1522692 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 || || || ||||| || ||||| || | ||||||| |||||| ||||| | Sbjct 1522691 ACTGCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCC 1522632 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 |||||||| || ||| ||||| | ||||| |||||||| | | | || | || Sbjct 1522631 GGTACCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCT 1522572 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| |||||||| || | | | ||| | || || |||| || ||||| Sbjct 1522571 CGTTACGTCGACCAGGGAGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCT 1522512 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| ||||| | ||| ||||||| || |||||||||||||| || || Sbjct 1522511 TGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 1522452 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | |||||||||||||| |||||| | || ||||| || ||||| || |||||| Sbjct 1522451 CGTGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAG 1522392 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT-TTG 94379 | || ||||| || | || || || || ||||| || || ||||| Sbjct 1522391 GCCGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCAC 1522332 Query 94380 TGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAGGAAGG 94438 | | | | ||||| | | || | |||| | ||| ||||||||| | ||| Sbjct 1522331 TCGGAGGAG-TTTGAGGCTCTCTACGAGAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGA 1522274 Query 94439 TTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGC 94498 || | ||| |||||| ||| ||| | || | ||| ||||| ||| | Sbjct 1522273 CCATCAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGGTGGCC 1522214 Query 94499 CCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGA 94558 ||| ||| | | ||||||| | | |||| |||||| |||||||||||||| || | Sbjct 1522213 CCTTCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGGTACCA 1522154 Query 94559 TCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTG 94618 ||||| || || || ||||| ||||| | ||||| ||||||| |||||| |||| | Sbjct 1522153 TCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGTTGCCG 1522094 Query 94619 TGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GATGCCTACACGTCT 94674 | || ||||| | ||| ||| || | | || || ||| || | |||| || Sbjct 1522093 TCTGCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGT-CGACTTTGAGAACAACAC--CT 1522037 Query 94675 ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT---CTTGAAC 94731 || |||| || |||| | || | |||| | || | |||| Sbjct 1522036 ACGACTTC----------AAGAAGCTCCACGAGATCAC--CAAGG-TCGTCACCAAGAAC 1521990 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 || || | || ||| |||| |||||||||||| ||||| ||||| ||| || Sbjct 1521989 CTCGACTGTGTCATCTCGCGCAACTACTACCCCGTCCCCGAGGCCCGCAACTCGAACATG 1521930 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || || ||| | || |||| ||||||||| | || ||| | | || | || Sbjct 1521929 CGTCACCGCCCCGTTGGTCTCGGTGTCCAGGGTCTTGCCGACACCTTCATGGCTCTCCGC 1521870 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTCGAAAGCATT 94908 |||||| |||||| | | ||| || || | || | | || ||||| | ||| Sbjct 1521869 ATGCCCTTCGACTC-GCC--CGCTGCTCGTCAGCTCAACCTCCAGATCTTCGAGACCATC 1521813 Query 94909 TATTACGGGGCCATGAAACAATCCGTC----CACTTGGCCAGATCGGACGGCGGGC-CAC 94963 || ||| || | | | |||| | |||| ||| ||| ||| | Sbjct 1521812 TACCACGCTGCTCT----CGAGTCGTCGTGTGAGATGGC--TGTCG--AGGCTGGCACCT 1521761 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG---G 95020 || |||| | || |||||| | ||||||| ||||||||||||||||| Sbjct 1521760 ACCCCTCGTACGAGGGTTCGCCCATCTCGCAGGGCAAGCTTCAGTTCGACCTCTGGAACC 1521701 Query 95021 GTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACG 95080 | || || | | || | ||||||| | || || | | || ||| |||| Sbjct 1521700 GCGT---TCCTACCGACCTCTGGAACTGGGACGAGCTCCGTGAGAAGATTGCCAAGCACG 1521644 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 |||| ||| |||| || || ||||| |||||||| ||||| || ||||||| || | Sbjct 1521643 GTGTCCGCAACTCGCTCCTCGTTGCCCCTATGCCCACCGCCTCGACCTCGCAGATTCTCG 1521584 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 || ||||||| ||||| |||| |||||| | | ||| | || || || | | Sbjct 1521583 GCTGGAACGAGTGCTTCGAGCCCTACACCTCGATGCTCTACTCGCGTCGTGTTCTGTCAG 1521524 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || |||| ||| || | ||||| || ||||| | || ||| | |||| Sbjct 1521523 GTGACTTCCAGGTCGTCTGCCCCTGGCTCCTTCGTGACCTCATCAACCTTGGTCTCTGGG 1521464 Query 95261 GTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 || || | ||| | | | |||| || | || ||| ||||| |||| || Sbjct 1521463 ACGAGGAGATGAAGCAGCTCGTCATTGCTTCGGG----TGGTTCCATCCAGCACATTCCT 1521408 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || || || ||||||||||| ||||||||||||| |||||||| ||||| | Sbjct 1521407 GGTATCCCCGACGACATCAAGGCCATCTACAAGACCGTCTGGGAGATTTCGCAGAAGGCC 1521348 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | | |||| || |||| ||| || |||||||| |||| Sbjct 1521347 GTCATTGACCTTGCTGCCGACCGTGGAGCCTTCATCGACCAG 1521306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722983558600