Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq4 95.1 1e-14 >seq6 Length=1958011 Score = 131 bits (144), Expect = 2e-25 Identities = 302/447 (68%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| || | || || ||| ||||||||| | || || || ||| |||||| Sbjct 63524 GCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 63465 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | ||| | |||||||| || || ||| |||||| | Sbjct 63464 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTC 63405 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570 || ||||||||||| || || ||||| |||||||| ||||| | | | || || Sbjct 63404 ATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGC 63345 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 ||| | | | ||| ||| || || |||||||||| || || || Sbjct 63344 CGCCGCCC----GCACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGA 63289 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG-CGCAGTCCA 52689 ||||||| | || | ||||| || ||| |||| | |||||||||| || | | || Sbjct 63288 GCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACT-CA 63230 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAG 52748 ||||| ||||||| |||||||| || || |||||| | || ||| |||| | | ||| Sbjct 63229 TGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTC-GGCAACGAGAAG 63171 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 | | || | ||| || || || |||||| | | || ||||| |||||||| || Sbjct 63170 ACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCC 63111 Query 52809 AACTTTTTCGAGAAGCGAG--TCGGCG 52833 ||||| |||||| ||| | |||||| Sbjct 63110 AACTTCTTCGAGTCGCGTGTTTCGGCG 63084 Score = 113 bits (124), Expect = 4e-20 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 41474 GACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 41533 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||| ||||| ||||| || ||||| || | || | |||| Sbjct 41534 AAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGGATCTTGCTCTTAAC 41592 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| ||||||| ||| | ||| || || || || || | Sbjct 41593 GTTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCT 41651 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||| ||||||||| || Sbjct 41652 TCACAAAGATCTGCATGCCT 41671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| ||||||||| || || |||| Sbjct 41930 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 41989 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 41990 AAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 42048 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| |||||| ||||| | || | || || || || || || | Sbjct 42049 GTTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCT 42107 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 42108 TGACGAAGATCTGCAT 42123 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||| || || |||| Sbjct 41702 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 41761 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| ||||| ||||| ||||| || ||||| ||| || || | Sbjct 41762 AAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACG 41821 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | |||||| ||||||| ||| | ||| || || |||| ||| || Sbjct 41822 TTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTG 41881 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 41882 ACGAAGATCTGCAT 41895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||||| ||||||||| || || |||| Sbjct 42158 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 42217 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 42218 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 42277 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571 | || | |||||| | ||||| ||||||| Sbjct 42278 TTGTCAATGGTGTCCGAGGACTCGACCTCGA 42308 >seq4 Length=2551142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 |||||||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct 1013207 CGCAGTCCATGTGCCAGTACATGGAGTTTGTCGCGGACCGTCTCGTCGTCGCGCTCGGCT 1013148 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | ||| || | || || ||| ||||| || | ||| | ||| ||||| ||| Sbjct 1013147 ACGACAAGATCTACTACTCTGCCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 1013088 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| |||||||||||||| ||| || ||| ||| Sbjct 1013087 GCAAGGCCAACTTTTTCGAGTCGCGCGTGAGCGCGTA 1013051 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 ||||||||| | || || || ||| ||||| |||||||| | | || | | || Sbjct 1013511 GTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTCAAGAAGCGCGGG 1013452 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | |||| |||||||||||| ||||||| | || ||||||||||| || ||||||| Sbjct 1013451 CTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACC 1013392 Query 52539 GACTTTGCGTGCCT 52552 |||||||| ||||| Sbjct 1013391 GACTTTGCATGCCT 1013378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262182885200