Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 2e-25
seq4 95.1 1e-14
>seq6
Length=1958011
Score = 131 bits (144), Expect = 2e-25
Identities = 302/447 (68%), Gaps = 11/447 (2%)
Strand=Plus/Minus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
|| ||||| || | || || ||| ||||||||| | || || || ||| ||||||
Sbjct 63524 GCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 63465
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
||||||| | | || | | ||| | |||||||| || || ||| |||||| |
Sbjct 63464 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTC 63405
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570
|| ||||||||||| || || ||||| |||||||| ||||| | | | || ||
Sbjct 63404 ATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGC 63345
Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
||| | | | ||| ||| || || |||||||||| || || ||
Sbjct 63344 CGCCGCCC----GCACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGA 63289
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG-CGCAGTCCA 52689
||||||| | || | ||||| || ||| |||| | |||||||||| || | | ||
Sbjct 63288 GCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACT-CA 63230
Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAG 52748
||||| ||||||| |||||||| || || |||||| | || ||| |||| | | |||
Sbjct 63229 TGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTC-GGCAACGAGAAG 63171
Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808
| | || | ||| || || || |||||| | | || ||||| |||||||| ||
Sbjct 63170 ACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCC 63111
Query 52809 AACTTTTTCGAGAAGCGAG--TCGGCG 52833
||||| |||||| ||| | ||||||
Sbjct 63110 AACTTCTTCGAGTCGCGTGTTTCGGCG 63084
Score = 113 bits (124), Expect = 4e-20
Identities = 147/200 (74%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||||||| || || ||||
Sbjct 41474 GACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 41533
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || || ||||| ||||| ||||| ||||| || ||||| || | || | ||||
Sbjct 41534 AAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGGATCTTGCTCTTAAC 41592
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||||| |||||| ||||||| ||| | ||| || || || || || |
Sbjct 41593 GTTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCT 41651
Query 138599 TTACAAAAATCTGCATGGCT 138618
| ||||| ||||||||| ||
Sbjct 41652 TCACAAAGATCTGCATGCCT 41671
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||||| ||||||||| || || ||||
Sbjct 41930 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 41989
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||| ||||| || || || || || ||||| ||| | || | || |
Sbjct 41990 AAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 42048
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| |||||| ||||| | || | || || || || || || |
Sbjct 42049 GTTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCT 42107
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 42108 TGACGAAGATCTGCAT 42123
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || |||||||| || || ||||
Sbjct 41702 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 41761
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || || ||||| ||||| ||||| ||||| || ||||| ||| || || |
Sbjct 41762 AAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACG 41821
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||| | |||||| ||||||| ||| | ||| || || |||| ||| ||
Sbjct 41822 TTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTG 41881
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 41882 ACGAAGATCTGCAT 41895
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||||| ||||||||| || || ||||
Sbjct 42158 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 42217
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| || || || || || ||||| ||| || || |
Sbjct 42218 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 42277
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571
| || | |||||| | ||||| |||||||
Sbjct 42278 TTGTCAATGGTGTCCGAGGACTCGACCTCGA 42308
>seq4
Length=2551142
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740
|||||||||||||| ||||||| |||||||| ||||| ||||| | || ||||||
Sbjct 1013207 CGCAGTCCATGTGCCAGTACATGGAGTTTGTCGCGGACCGTCTCGTCGTCGCGCTCGGCT 1013148
Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| ||| || | || || ||| ||||| || | ||| | ||| ||||| |||
Sbjct 1013147 ACGACAAGATCTACTACTCTGCCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 1013088
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||| |||||||||||||| ||| || ||| |||
Sbjct 1013087 GCAAGGCCAACTTTTTCGAGTCGCGCGTGAGCGCGTA 1013051
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478
||||||||| | || || || ||| ||||| |||||||| | | || | | ||
Sbjct 1013511 GTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTCAAGAAGCGCGGG 1013452
Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538
| |||| |||||||||||| ||||||| | || ||||||||||| || |||||||
Sbjct 1013451 CTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACC 1013392
Query 52539 GACTTTGCGTGCCT 52552
|||||||| |||||
Sbjct 1013391 GACTTTGCATGCCT 1013378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262182885200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |