Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 2e-23
seq4 102 8e-17
seq1 102 8e-17
seq9 91.5 1e-13
>seq6
Length=1958011
Score = 123 bits (136), Expect = 2e-23
Identities = 300/450 (67%), Gaps = 17/450 (4%)
Strand=Plus/Minus
Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192
|| || ||| |||| || || ||| |||||||||| |||||||||||||| |||||
Sbjct 63524 GCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 63465
Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252
| || || | | || | || | |||||||| ||||| || ||||||||
Sbjct 63464 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTC 63405
Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACACTAGAGT 47311
|| ||| | ||||| || || |||||| |||||||||| || || | |||
Sbjct 63404 ATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCAC------ 63351
Query 47312 CGATCAAAAGTTGGACGTGCCC--ACCGTCAGCGACATGTTTGCC---GAAGCCGTCGCC 47366
|| | | || ||| ||| ||| ||| | | || | || ||||||
Sbjct 63350 --CTCCGCCGCCGCCCGCACCCCGACC-TCATCGAGAAGATTATCAAGGAGGCCGTCAAG 63294
Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426
|||||| |||||| || ||||||| || |||| || | | || |||||||| |
Sbjct 63293 ATTGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGA 63234
Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486
| ||| | ||||||| || |||||||||||||| |||||||| || |
Sbjct 63233 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAG 63174
Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546
|||| ||| || | || || ||||| |||||| | | || |||||| ||||||||
Sbjct 63173 AAGACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAG 63114
Query 47547 ACCAACTTTTTCGAGAAGCGCG--TCGGCG 47574
||||||| |||||| ||| | ||||||
Sbjct 63113 GCCAACTTCTTCGAGTCGCGTGTTTCGGCG 63084
Score = 114 bits (126), Expect = 1e-20
Identities = 148/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | |||||| || || ||||| || ||
Sbjct 41471 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 41530
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| |||||||| || |||||||||||| ||| || |||
Sbjct 41531 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTA 41590
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||| | |||||| |||| || | ||| |||||||| || ||
Sbjct 41591 ACGTTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGT 41649
Query 127096 TTTTACAAAAATCTGCATGGCT 127117
|| ||||| ||||||||| ||
Sbjct 41650 CTTCACAAAGATCTGCATGCCT 41671
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | |||||| ||| || ||||| || ||
Sbjct 41699 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 41758
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| |||||||| || |||||||||||| ||| || |||
Sbjct 41759 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 41818
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| ||| || |||| || | ||| |||||||||| |||
Sbjct 41819 ACGTTG-TCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGT 41877
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 41878 CTTGACGAAGATCTGCAT 41895
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | || || || || ||||| || ||
Sbjct 41927 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 41986
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| ||||| || ||||||||||||||| || ||| ||||
Sbjct 41987 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 42046
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | |||||| || | ||| | || |||||||| || ||
Sbjct 42047 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 42105
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 42106 CTTGACGAAGATCTGCAT 42123
Score = 96.9 bits (106), Expect = 3e-15
Identities = 129/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || || || || || ||||| || ||
Sbjct 42155 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 42214
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| ||||| || ||||||||||||||| ||| || ||||
Sbjct 42215 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 42274
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
| |||| || | |||||||| |||||| |||| ||| | || |||||||| ||
Sbjct 42275 ACGTTG-TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 42330
>seq4
Length=2551142
Score = 102 bits (112), Expect = 8e-17
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202
|||| || || || |||||||||| |||||||||||||| |||||||| || || |
Sbjct 1013528 TGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCT 1013469
Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262
| || | || | |||| |||||| |||||| ||||||||| |||||| | |
Sbjct 1013468 GGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCG 1013409
Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCT 47293
|||| ||| |||||||| ||||||| || ||
Sbjct 1013408 ACGAGGGCATGCACACCGACTTTGCATGCCT 1013378
>seq1
Length=6947394
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | ||||| || || ||||| || ||
Sbjct 6691111 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 6691052
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| ||||| || ||||||||||||||| ||| || ||||
Sbjct 6691051 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6690992
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| |||||| |||| ||| | || ||||| || || ||
Sbjct 6690991 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGT 6690933
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 6690932 CTTGACGAAGATCTGCAT 6690915
>seq9
Length=1289175
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | |||||||| || || || ||||||||||||
Sbjct 761739 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 761680
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| ||| ||||| |||| |||| ||||||| |||||| |||| ||| |
Sbjct 761679 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 761621
Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101
|| |||||||| || || || ||
Sbjct 761620 GGTCTTGCCGGTGAGGGTCTTGAC 761597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500591968400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |