Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq4 102 8e-17 seq1 102 8e-17 seq9 91.5 1e-13 >seq6 Length=1958011 Score = 123 bits (136), Expect = 2e-23 Identities = 300/450 (67%), Gaps = 17/450 (4%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 || || ||| |||| || || ||| |||||||||| |||||||||||||| ||||| Sbjct 63524 GCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 63465 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | | || | || | |||||||| ||||| || |||||||| Sbjct 63464 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTC 63405 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACACTAGAGT 47311 || ||| | ||||| || || |||||| |||||||||| || || | ||| Sbjct 63404 ATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCAC------ 63351 Query 47312 CGATCAAAAGTTGGACGTGCCC--ACCGTCAGCGACATGTTTGCC---GAAGCCGTCGCC 47366 || | | || ||| ||| ||| ||| | | || | || |||||| Sbjct 63350 --CTCCGCCGCCGCCCGCACCCCGACC-TCATCGAGAAGATTATCAAGGAGGCCGTCAAG 63294 Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426 |||||| |||||| || ||||||| || |||| || | | || |||||||| | Sbjct 63293 ATTGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGA 63234 Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486 | ||| | ||||||| || |||||||||||||| |||||||| || | Sbjct 63233 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAG 63174 Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546 |||| ||| || | || || ||||| |||||| | | || |||||| |||||||| Sbjct 63173 AAGACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAG 63114 Query 47547 ACCAACTTTTTCGAGAAGCGCG--TCGGCG 47574 ||||||| |||||| ||| | |||||| Sbjct 63113 GCCAACTTCTTCGAGTCGCGTGTTTCGGCG 63084 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | |||||| || || ||||| || || Sbjct 41471 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 41530 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| |||||||| || |||||||||||| ||| || ||| Sbjct 41531 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTA 41590 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| || | ||| |||||||| || || Sbjct 41591 ACGTTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGT 41649 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 41650 CTTCACAAAGATCTGCATGCCT 41671 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | |||||| ||| || ||||| || || Sbjct 41699 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 41758 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| |||||||| || |||||||||||| ||| || ||| Sbjct 41759 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 41818 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| ||| || |||| || | ||| |||||||||| ||| Sbjct 41819 ACGTTG-TCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGT 41877 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 41878 CTTGACGAAGATCTGCAT 41895 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || || || ||||| || || Sbjct 41927 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 41986 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| || ||| |||| Sbjct 41987 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 42046 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| || | ||| | || |||||||| || || Sbjct 42047 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 42105 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 42106 CTTGACGAAGATCTGCAT 42123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || || || ||||| || || Sbjct 42155 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 42214 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 42215 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 42274 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| || | |||||||| |||||| |||| ||| | || |||||||| || Sbjct 42275 ACGTTG-TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 42330 >seq4 Length=2551142 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||| || || || |||||||||| |||||||||||||| |||||||| || || | Sbjct 1013528 TGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCT 1013469 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 | || | || | |||| |||||| |||||| ||||||||| |||||| | | Sbjct 1013468 GGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCG 1013409 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCT 47293 |||| ||| |||||||| ||||||| || || Sbjct 1013408 ACGAGGGCATGCACACCGACTTTGCATGCCT 1013378 >seq1 Length=6947394 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 6691111 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 6691052 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 6691051 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6690992 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| |||||| |||| ||| | || ||||| || || || Sbjct 6690991 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGT 6690933 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6690932 CTTGACGAAGATCTGCAT 6690915 >seq9 Length=1289175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || || || |||||||||||| Sbjct 761739 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 761680 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| ||||||| |||||| |||| ||| | Sbjct 761679 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 761621 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || |||||||| || || || || Sbjct 761620 GGTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500591968400