Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 237 2e-57 seq6 129 7e-25 seq9 116 5e-21 seq4 104 3e-17 seq5 86.0 8e-12 >seq1 Length=6947394 Score = 237 bits (262), Expect = 2e-57 Identities = 687/1048 (66%), Gaps = 31/1048 (3%) Strand=Plus/Plus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || ||||| ||||||||||| |||| ||||| || | ||| || || || || || Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC- 1521947 Query 116308 GTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 ||| ||||| || | || | ||| || | | || || |||||||| ||| Sbjct 1521948 --CTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACC 1522005 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 116424 || ||||| || || ||||| | | | || | || |||| | |||| | | Sbjct 1522006 TTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCA 1522065 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || ||||| || || || || || || | ||| || | || |||||| || Sbjct 1522066 GGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATG 1522125 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || || | || || ||| ||||| |||| || || || || ||||| | Sbjct 1522126 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGG 1522185 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || |||||||||||||| | || || ||||| || |||| || || || Sbjct 1522186 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATG 1522245 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTC 116657 | ||| | | || | | || | ||| ||| || |||| |||| ||| Sbjct 1522246 GAGAACCAGAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCGCTC 1522298 Query 116658 GTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCC 116715 |||||| |||||| ||||||||||| || | | | | || ||||| || || | Sbjct 1522299 GTACTTCTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCCGAGAGACCGGGGCAC 1522356 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | || || | ||| | ||| | ||| | |||| || ||||||||||||||||| Sbjct 1522357 TCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCG 1522416 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 ||||||||||| || ||||||| || ||| ||| | || || | || || || Sbjct 1522417 GGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTG 1522476 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 || | || | ||||| | || || |||||||| || || ||||| | || | | Sbjct 1522477 CGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCA 1522536 Query 116896 CCCTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 || ||| || |||||| || || | || || |||| || | || ||| Sbjct 1522537 CCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGC 1522596 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTC 117010 || || | ||||| | || | || || || || ||| |||| | | |||| | Sbjct 1522597 ATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCT--TGGCAC 1522654 Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070 || | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | Sbjct 1522655 GGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT 1522714 Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130 |||| || ||||||| || ||||||||||| |||| | |||| |||||||| || Sbjct 1522715 TGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACG 1522774 Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190 |||| || || | || |||||||||||||||||||| || | |||||| |||| | Sbjct 1522775 ACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGC 1522834 Query 117191 CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGA 117250 | ||||| | ||| ||||| | ||| | ||||| || ||||| ||||||| Sbjct 1522835 GCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGA 1522894 Query 117251 TTGAGACCCGCATAAACATGTATTGGGG 117278 | || || ||||| | ||||| ||||| Sbjct 1522895 TCGACACGCGCATGATCATGTGCTGGGG 1522922 Score = 84.2 bits (92), Expect = 3e-11 Identities = 297/455 (65%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||||||||| || || |||||||| || |||||||| | || | ||||| |||| Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || |||| | || | | | | || ||| | || || || ||||||||| Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 1521318 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||| || || || || | ||||| || ||||| | || ||||| || || || Sbjct 1521319 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTG 1521378 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTG---C 115793 |||| | ||| || || || |||||| ||| || | | ||||| || ||||| | | Sbjct 1521379 TAGATGGCCTTGATGTCGTCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGC 1521437 Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 |||| ||| | |||||| |||| ||||||||||| || |||| | ||| Sbjct 1521438 AATGAC---GAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGT----CAC 1521490 Query 115854 G-AGGTGCTTATTGACA-ACAAC---AAACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908 | ||| || | | || || || || ||||| | || || | | |||| Sbjct 1521491 GAAGGAGC-CAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAGTAGAGC 1521549 Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968 | | ||||| ||||| |||||||| || || | || || | || ||||| ||| Sbjct 1521550 ATCGAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTG 1521609 Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 ||||| || || | ||| || |||||||| ||| Sbjct 1521610 GGCATAGGGGCAACGAGGAGCGAGTTGCGGACACC 1521644 >seq6 Length=1958011 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || || ||||| || ||||||||| ||||| Sbjct 63370 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCG 63429 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | ||| ||||| ||||||||||| Sbjct 63430 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATG 63489 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || || ||||||| |||||||| ||||| || Sbjct 63490 CCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA 63530 >seq9 Length=1289175 Score = 116 bits (128), Expect = 5e-21 Identities = 293/443 (66%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || |||||||| |||| ||||| | ||||||||| |||| || || | |||| Sbjct 1226948 AACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGT 1226889 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | || || || ||| | ||||| || | | |||||||| | || ||| || | Sbjct 1226888 ACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGG 1226829 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | ||||| | || | ||| | || || || ||||| || || | | | | Sbjct 1226828 GGTGGAAGATCGTGCGGGTCATGCGGGG-GACGTTGGTGAAAATATAACGAGGGCTGGCC 1226770 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||| || |||||| | || || || || ||||| ||||| || || ||||| Sbjct 1226769 GCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATG 1226710 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | ||||| | || | |||||||| | | | |||| Sbjct 1226709 TTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCG 1226650 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCA 176104 ||||| ||||| || | ||| |||| || || | | | ||| || ||||| || || Sbjct 1226649 CCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCC 1226590 Query 176105 TCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCG 176164 | ||||||||| |||||| || |||||||||| | ||| ||||||||||||| Sbjct 1226589 TTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTGCGCTGACCAGGCTTGAGGCCG 1226530 Query 176165 TCGGCCATGTGTGCGATGGAACG 176187 ||||| | | ||||||||| Sbjct 1226529 TCGGCAACCGAGGGGATGGAACG 1226507 >seq4 Length=2551142 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| || |||||||| || || || || ||| || Sbjct 1013384 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCG 1013443 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||| || |||||||| | |||||| || || ||| ||||| ||||||||||| Sbjct 1013444 CGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAGAAGATG 1013503 Query 127640 CCCTCCACACACGCGAACGCAA 127661 ||||| || ||||| ||||||| Sbjct 1013504 CCCTCGACGCACGCAAACGCAA 1013525 >seq5 Length=2075171 Score = 86.0 bits (94), Expect = 8e-12 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 ||| |||| ||||||||| || || | ||| | ||||||||| || | | ||| Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 | || | || ||||| | | || ||||||||| || |||||||||||||| | || Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847 Query 12992 GGCGGA-ACATTGG--ATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 | || || || | |||||| || |||| ||||| ||| | || |||||| || Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 ||||| || || || || |||| ||| | ||| || || |||||| |||| || Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506931590600