Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1 237 2e-57
seq6 129 7e-25
seq9 116 5e-21
seq4 104 3e-17
seq5 86.0 8e-12
>seq1
Length=6947394
Score = 237 bits (262), Expect = 2e-57
Identities = 687/1048 (66%), Gaps = 31/1048 (3%)
Strand=Plus/Plus
Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307
|| || ||||| ||||||||||| |||| ||||| || | ||| || || || || ||
Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC- 1521947
Query 116308 GTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364
||| ||||| || | || | ||| || | | || || |||||||| |||
Sbjct 1521948 --CTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACC 1522005
Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 116424
|| ||||| || || ||||| | | | || | || |||| | |||| | |
Sbjct 1522006 TTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCA 1522065
Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484
|| || ||||| || || || || || || | ||| || | || |||||| ||
Sbjct 1522066 GGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATG 1522125
Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544
|| || || || | || || ||| ||||| |||| || || || || ||||| |
Sbjct 1522126 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGG 1522185
Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604
|| || |||||||||||||| | || || ||||| || |||| || || ||
Sbjct 1522186 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATG 1522245
Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTC 116657
| ||| | | || | | || | ||| ||| || |||| |||| |||
Sbjct 1522246 GAGAACCAGAGCTTCTGAGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCGCGCTC 1522298
Query 116658 GTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCC 116715
|||||| |||||| ||||||||||| || | | | | || ||||| || || |
Sbjct 1522299 GTACTTCTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCCGAGAGACCGGGGCAC 1522356
Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775
| | || || | ||| | ||| | ||| | |||| || |||||||||||||||||
Sbjct 1522357 TCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCG 1522416
Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835
||||||||||| || ||||||| || ||| ||| | || || | || || ||
Sbjct 1522417 GGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTG 1522476
Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895
|| | || | ||||| | || || |||||||| || || ||||| | || | |
Sbjct 1522477 CGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCA 1522536
Query 116896 CCCTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952
|| ||| || |||||| || || | || || |||| || | || |||
Sbjct 1522537 CCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGC 1522596
Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTC 117010
|| || | ||||| | || | || || || || ||| |||| | | |||| |
Sbjct 1522597 ATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCT--TGGCAC 1522654
Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070
|| | ||||||||| | ||| ||||| || || ||| ||||| || ||||| |
Sbjct 1522655 GGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT 1522714
Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130
|||| || ||||||| || ||||||||||| |||| | |||| |||||||| ||
Sbjct 1522715 TGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACG 1522774
Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190
|||| || || | || |||||||||||||||||||| || | |||||| |||| |
Sbjct 1522775 ACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGC 1522834
Query 117191 CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGA 117250
| ||||| | ||| ||||| | ||| | ||||| || ||||| |||||||
Sbjct 1522835 GCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGA 1522894
Query 117251 TTGAGACCCGCATAAACATGTATTGGGG 117278
| || || ||||| | ||||| |||||
Sbjct 1522895 TCGACACGCGCATGATCATGTGCTGGGG 1522922
Score = 84.2 bits (92), Expect = 3e-11
Identities = 297/455 (65%), Gaps = 18/455 (4%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
||||||||||| || || |||||||| || |||||||| | || | ||||| ||||
Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| || |||| | || | | | | || ||| | || || || |||||||||
Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 1521318
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737
||| || || || || | ||||| || ||||| | || ||||| || || ||
Sbjct 1521319 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTG 1521378
Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTG---C 115793
|||| | ||| || || || |||||| ||| || | | ||||| || ||||| | |
Sbjct 1521379 TAGATGGCCTTGATGTCGTCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGC 1521437
Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853
|||| ||| | |||||| |||| ||||||||||| || |||| | |||
Sbjct 1521438 AATGAC---GAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGT----CAC 1521490
Query 115854 G-AGGTGCTTATTGACA-ACAAC---AAACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908
| ||| || | | || || || || ||||| | || || | | ||||
Sbjct 1521491 GAAGGAGC-CAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAGTAGAGC 1521549
Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968
| | ||||| ||||| |||||||| || || | || || | || ||||| |||
Sbjct 1521550 ATCGAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTG 1521609
Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003
||||| || || | ||| || |||||||| |||
Sbjct 1521610 GGCATAGGGGCAACGAGGAGCGAGTTGCGGACACC 1521644
>seq6
Length=1958011
Score = 129 bits (142), Expect = 7e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || || ||||| || ||||||||| |||||
Sbjct 63370 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCG 63429
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| || |||||||| | |||||| || | ||| ||||| |||||||||||
Sbjct 63430 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATG 63489
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
||||| || || ||||||| |||||||| ||||| ||
Sbjct 63490 CCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA 63530
>seq9
Length=1289175
Score = 116 bits (128), Expect = 5e-21
Identities = 293/443 (66%), Gaps = 2/443 (0%)
Strand=Plus/Minus
Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805
|||| || |||||||| |||| ||||| | ||||||||| |||| || || | ||||
Sbjct 1226948 AACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGT 1226889
Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
| || || || ||| | ||||| || | | |||||||| | || ||| || |
Sbjct 1226888 ACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGG 1226829
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | ||||| | || | ||| | || || || ||||| || || | | | |
Sbjct 1226828 GGTGGAAGATCGTGCGGGTCATGCGGGG-GACGTTGGTGAAAATATAACGAGGGCTGGCC 1226770
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
||||| || |||||| | || || || || ||||| ||||| || || |||||
Sbjct 1226769 GCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATG 1226710
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | ||||| | || | |||||||| | | | ||||
Sbjct 1226709 TTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCG 1226650
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCA 176104
||||| ||||| || | ||| |||| || || | | | ||| || ||||| || ||
Sbjct 1226649 CCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCC 1226590
Query 176105 TCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCG 176164
| ||||||||| |||||| || |||||||||| | ||| |||||||||||||
Sbjct 1226589 TTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTGCGCTGACCAGGCTTGAGGCCG 1226530
Query 176165 TCGGCCATGTGTGCGATGGAACG 176187
||||| | | |||||||||
Sbjct 1226529 TCGGCAACCGAGGGGATGGAACG 1226507
>seq4
Length=2551142
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| | |||||||| || |||||||| || || || || ||| ||
Sbjct 1013384 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCG 1013443
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||| || |||||||| | |||||| || || ||| ||||| |||||||||||
Sbjct 1013444 CGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAGAAGATG 1013503
Query 127640 CCCTCCACACACGCGAACGCAA 127661
||||| || ||||| |||||||
Sbjct 1013504 CCCTCGACGCACGCAAACGCAA 1013525
>seq5
Length=2075171
Score = 86.0 bits (94), Expect = 8e-12
Identities = 163/237 (69%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931
||| |||| ||||||||| || || | ||| | ||||||||| || | | |||
Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907
Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991
| || | || ||||| | | || ||||||||| || |||||||||||||| | ||
Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847
Query 12992 GGCGGA-ACATTGG--ATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048
| || || || | |||||| || |||| ||||| ||| | || |||||| ||
Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790
Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
||||| || || || || |||| ||| | ||| || || |||||| |||| ||
Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506931590600
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