Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 seq1 120 5e-22 >seq4 Length=2551142 Score = 122 bits (134), Expect = 1e-22 Identities = 182/256 (71%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG 159874 || ||||| |||| ||| |||||||| || || ||||| || ||| |||||||| || | Sbjct 1013276 GGCAGCGCGTCCGTCAGGAACTCCTTTTCGATTTCGACGGCCTCGCGCACAATCT-CGTG 1013334 Query 159875 A-----CACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929 | | | || | |||| ||| || ||| | |||| ||||| |||| Sbjct 1013335 CACCTGCTCCTGCGGGCACCGG--TGCT-----TGAGGTGCCCGTACAGCAGGCATGCAA 1013387 Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989 ||||| ||||| |||||||| || ||||||| ||||||||| | | ||||| ||| Sbjct 1013388 AGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCGCGCA 1013447 Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCT 160049 ||| ||| ||| |||||||| || ||||||||||| | || || ||||| |||| Sbjct 1013448 TGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAGAAGATGCCCT 1013507 Query 160050 CCACGGCCGCAAACGC 160065 | ||| ||||||||| Sbjct 1013508 CGACGCACGCAAACGC 1013523 >seq1 Length=6947394 Score = 120 bits (132), Expect = 5e-22 Identities = 326/491 (66%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || ||||||||||||||||| | | ||| | | | || ||||| |||||||| Sbjct 1521159 GTCGACAGTGAACTGAATGGCGTTGGCCGAAGGACGCGTGCGGAGGTAGTAGATGCCGGT 1521218 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGGGT 203960 ||| || || || ||| ||||| | |||||| || | || | | ||| ||| | Sbjct 1521219 CTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGCGAGAACGACGGGTT 1521278 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 ||| | ||| ||||| || ||||| ||||||||| ||||| || || || || || Sbjct 1521279 -GGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATG-AAGGCTCCACGGTCGGCAGCA 1521336 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 | | || | || |||||||||||||||||| || |||||| | | | | || ||| Sbjct 1521337 AGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTGTAGATGGCCTTGATGTCG 1521396 Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | | | | || || ||| || || || || | | | || | Sbjct 1521397 TCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGCAATGACGAGCTGCTTCAT 1521455 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 |||||| |||| | || | |||| || || || | || |||| || || ||| Sbjct 1521456 CTCCTCGTCCCAGAGACCAAGGTTGATGAGGTCACGAAGGAGCCAGGGGCAGACGACCTG 1521515 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 ||||| || ||||| || | || | | | || | |||| | || ||||| ||| Sbjct 1521516 GAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCGAAGCACTC 1521575 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||| ||||| |||||| | ||| ||| |||||||| || || | ||| || ||||| Sbjct 1521576 GTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCATAGGGGCAACGAGGAGCGAGTT 1521635 Query 204319 GCGCACACCGT 204329 ||| ||||||| Sbjct 1521636 GCGGACACCGT 1521646 Score = 116 bits (128), Expect = 6e-21 Identities = 437/678 (64%), Gaps = 12/678 (2%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| ||||||||||| ||||||||||| || ||||||||| | |||||| || Sbjct 1522159 CCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCA 1522218 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038 || |||| |||| | || ||| | ||| | | |||||| | |||| Sbjct 1522219 CCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTG 1522278 Query 205039 CTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA 205098 | | | | | ||| | | |||||| || ||| || ||| |||| || || Sbjct 1522279 CGACCCTTGC---CCTCGCG-CTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCCGAGTG 1522334 Query 205099 CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTT 205158 |||||| || || || || | || ||||| || | ||| |||| | | Sbjct 1522335 GACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTC 1522394 Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218 || | || ||| || |||||| |||||| ||| |||| || || ||||| || | || Sbjct 1522395 GACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAAC 1522454 Query 205219 TCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACG 205277 | || | || ||||||| | ||| || ||| || | | |||||||||||| | Sbjct 1522455 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGACGTCGGCGTGCCAAG 1522513 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337 |||| | | | ||| | || || || | |||||| || |||||||| || |||| Sbjct 1522514 GCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAG 1522573 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397 | |||| | | | || ||||| || || | |||||| | | ||||| || | | Sbjct 1522574 CAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGG 1522633 Query 205398 TGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 ||| ||| || | || | | |||| |||| || || ||||| | | || Sbjct 1522634 CAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCT 1522693 Query 205458 TGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 ||| |||||||||||| ||||| || ||| |||||| || |||| || || ||| | Sbjct 1522694 TGGAGATCTGGGCGCAGGTCTTG-AGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTC 1522752 Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576 | | || || ||||||| | || || || | ||| || |||| |||||| || Sbjct 1522753 ATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTA 1522812 Query 205577 GGGCTGGCGTGGCTGAAG 205594 || ||||||| ||||| Sbjct 1522813 GGCGAGGCGTGGGTGAAG 1522830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154852119600