Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq4 122 1e-22
seq1 120 5e-22
>seq4
Length=2551142
Score = 122 bits (134), Expect = 1e-22
Identities = 182/256 (71%), Gaps = 13/256 (5%)
Strand=Plus/Plus
Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG 159874
|| ||||| |||| ||| |||||||| || || ||||| || ||| |||||||| || |
Sbjct 1013276 GGCAGCGCGTCCGTCAGGAACTCCTTTTCGATTTCGACGGCCTCGCGCACAATCT-CGTG 1013334
Query 159875 A-----CACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAA 159929
| | | || | |||| ||| || ||| | |||| ||||| ||||
Sbjct 1013335 CACCTGCTCCTGCGGGCACCGG--TGCT-----TGAGGTGCCCGTACAGCAGGCATGCAA 1013387
Query 159930 AGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCA 159989
||||| ||||| |||||||| || ||||||| ||||||||| | | ||||| |||
Sbjct 1013388 AGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCGCGCA 1013447
Query 159990 TGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCT 160049
||| ||| ||| |||||||| || ||||||||||| | || || ||||| ||||
Sbjct 1013448 TGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAGAAGATGCCCT 1013507
Query 160050 CCACGGCCGCAAACGC 160065
| ||| |||||||||
Sbjct 1013508 CGACGCACGCAAACGC 1013523
>seq1
Length=6947394
Score = 120 bits (132), Expect = 5e-22
Identities = 326/491 (66%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901
||| || ||||||||||||||||| | | ||| | | | || ||||| ||||||||
Sbjct 1521159 GTCGACAGTGAACTGAATGGCGTTGGCCGAAGGACGCGTGCGGAGGTAGTAGATGCCGGT 1521218
Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGGGT 203960
||| || || || ||| ||||| | |||||| || | || | | ||| ||| |
Sbjct 1521219 CTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGCGAGAACGACGGGTT 1521278
Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019
||| | ||| ||||| || ||||| ||||||||| ||||| || || || || ||
Sbjct 1521279 -GGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATG-AAGGCTCCACGGTCGGCAGCA 1521336
Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079
| | || | || |||||||||||||||||| || |||||| | | | | || |||
Sbjct 1521337 AGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTGTAGATGGCCTTGATGTCG 1521396
Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138
| || | | | | || || ||| || || || || | | | || |
Sbjct 1521397 TCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGCAATGACGAGCTGCTTCAT 1521455
Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198
|||||| |||| | || | |||| || || || | || |||| || || |||
Sbjct 1521456 CTCCTCGTCCCAGAGACCAAGGTTGATGAGGTCACGAAGGAGCCAGGGGCAGACGACCTG 1521515
Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258
||||| || ||||| || | || | | | || | |||| | || ||||| |||
Sbjct 1521516 GAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCGAAGCACTC 1521575
Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318
||| ||||| |||||| | ||| ||| |||||||| || || | ||| || |||||
Sbjct 1521576 GTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCATAGGGGCAACGAGGAGCGAGTT 1521635
Query 204319 GCGCACACCGT 204329
||| |||||||
Sbjct 1521636 GCGGACACCGT 1521646
Score = 116 bits (128), Expect = 6e-21
Identities = 437/678 (64%), Gaps = 12/678 (2%)
Strand=Plus/Plus
Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982
|||| ||||||||||| ||||||||||| || ||||||||| | |||||| ||
Sbjct 1522159 CCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCA 1522218
Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038
|| |||| |||| | || ||| | ||| | | |||||| | ||||
Sbjct 1522219 CCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTG 1522278
Query 205039 CTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA 205098
| | | | | ||| | | |||||| || ||| || ||| |||| || ||
Sbjct 1522279 CGACCCTTGC---CCTCGCG-CTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCCGAGTG 1522334
Query 205099 CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTT 205158
|||||| || || || || | || ||||| || | ||| |||| | |
Sbjct 1522335 GACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTC 1522394
Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218
|| | || ||| || |||||| |||||| ||| |||| || || ||||| || | ||
Sbjct 1522395 GACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAAC 1522454
Query 205219 TCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACG 205277
| || | || ||||||| | ||| || ||| || | | |||||||||||| |
Sbjct 1522455 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGACGTCGGCGTGCCAAG 1522513
Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337
|||| | | | ||| | || || || | |||||| || |||||||| || ||||
Sbjct 1522514 GCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAG 1522573
Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397
| |||| | | | || ||||| || || | |||||| | | ||||| || | |
Sbjct 1522574 CAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGG 1522633
Query 205398 TGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457
||| ||| || | || | | |||| |||| || || ||||| | | ||
Sbjct 1522634 CAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCT 1522693
Query 205458 TGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516
||| |||||||||||| ||||| || ||| |||||| || |||| || || ||| |
Sbjct 1522694 TGGAGATCTGGGCGCAGGTCTTG-AGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTC 1522752
Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576
| | || || ||||||| | || || || | ||| || |||| |||||| ||
Sbjct 1522753 ATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTA 1522812
Query 205577 GGGCTGGCGTGGCTGAAG 205594
|| ||||||| |||||
Sbjct 1522813 GGCGAGGCGTGGGTGAAG 1522830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154852119600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |