Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-34 seq1 156 5e-33 seq9 114 1e-20 >seq6 Length=1958011 Score = 161 bits (178), Expect = 1e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 41476 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 41535 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | | |||||||||| |||||| |||| | ||| Sbjct 41536 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTT-AACGT 41594 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | ||| || || ||||| || ||||| || | Sbjct 41595 TGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCA 41654 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 41655 CAAAGATCTGCAT 41667 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| |||||||||||||||||||| Sbjct 41932 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 41991 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 41992 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 42050 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||||| ||||| || || || || | Sbjct 42051 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 42110 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 42111 CGAAGATCTGCAT 42123 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| Sbjct 41704 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 41763 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | | |||||||||| |||||| |||| | ||| Sbjct 41764 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 41822 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||| || ||||| |||| || || | Sbjct 41823 TGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGA 41882 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 41883 CGAAGATCTGCAT 41895 Score = 118 bits (130), Expect = 1e-21 Identities = 131/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| |||||||||||||||||||| Sbjct 42160 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 42219 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 42220 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 42278 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || || | |||||||| ||||| || || Sbjct 42279 TGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 42330 >seq1 Length=6947394 Score = 156 bits (172), Expect = 5e-33 Identities = 155/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 6691106 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 6691047 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 6691046 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6690988 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| |||||||| || || || | Sbjct 6690987 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 6690928 Query 46581 CAAAGATTTGCATTTTGC 46598 | ||||| |||||||||| Sbjct 6690927 CGAAGATCTGCATTTTGC 6690910 >seq9 Length=1289175 Score = 114 bits (126), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| |||||||||||||||||||| || | ||||||| Sbjct 761762 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 761703 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | || |||||||||| ||||||| ||||| ||| | | | |||||| Sbjct 761702 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCC 761644 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 ||| || || || | |||||||| ||||| || || || || || Sbjct 761643 GACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238152708200