Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 208 8e-49 seq1 150 2e-31 seq3 102 8e-17 seq4 95.1 1e-14 >seq6 Length=1958011 Score = 208 bits (230), Expect = 8e-49 Identities = 390/564 (69%), Gaps = 28/564 (5%) Strand=Plus/Plus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAG 132722 |||||| || |||||||||| | || ||| ||| | |||||| || ||||||| Sbjct 63138 CATAAAGTCGAAGGGGTTGGTCGAGTAGTACGTCTTCTCGTTGCCGA---GGGCGACGAG 63194 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||| | |||||| || ||||| ||||| || ||||| | || || | || | ||| Sbjct 63195 CAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGTCCGGCGTTCATGCCAATCAG 63254 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 || || ||||| |||||||| || ||||| || ||| || || ||| || Sbjct 63255 CGAGACGGGGAGCGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAAT 63314 Query 132843 -TTCCCTA--ACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| | | | | || | ||| |||| | | | ||| | |||| || ||| | Sbjct 63315 CTTCTCGATGAGGTCGGGGTGCGGGCGGCGGCGG----AGGTGCGTAAACAGCAGGCAGG 63370 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 |||||||| || | |||||||| | |||||||| ||||| ||| || | |||| Sbjct 63371 CAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGG 63430 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||||||||| || |||||||| || |||| ||| || |||||| ||||||| || Sbjct 63431 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGC 63490 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TGGCTTCTTTGCTGGCGATC 133077 |||||||||| || || || | ||| ||||| | |||| | |||| | | | |||| Sbjct 63491 CCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGAAGACTTC-TCGTCCGAGATC 63549 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 |||||||||||||| |||||||| | |||| |||||| || | || |||||||| || Sbjct 63550 CAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTCTCAATGGCGTTGAA- 63608 Query 133138 AAACGGAGTTTC-TCTTCCGAGGA-----ACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 ||| | | | || | | || | ||| |||||||||||| || ||| Sbjct 63609 -----GAGGTACGTGCGGCGGGCATTGTCGCGAATGTACGTGTCGATGAGGAGTGAGTAC 63663 Query 133192 ATTTCCGAGTGTACGTTCTCCATG 133215 | |||||||| | ||||||| || Sbjct 63664 GTCTCCGAGTGGATGTTCTCCCTG 63687 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| | || Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| |||||| ||||||| Sbjct 42063 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 42005 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| || ||||| ||||||||| Sbjct 42004 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAA 41945 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 41944 CATCCAGAAGGA 41933 Score = 125 bits (138), Expect = 7e-24 Identities = 132/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| ||||| ||||||||| |||| |||||| || | |||| | | | |||| | || Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 42272 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| |||||| ||||||| ||||| ||||| | ||| || Sbjct 42271 GTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 42212 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||| ||||| || |||| || ||||| ||||||||||||||| ||||| Sbjct 42211 CAAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 42161 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || || || |||| |||||| | || Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | | || || | ||| ||||| ||||| || || ||||||| Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGA-TCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||| |||| || || Sbjct 41488 CATCCAGAAGGAGTCGACTCTCCA 41465 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| |||| || ||| | | Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || |||| ||||| ||||| || || ||||||| Sbjct 41835 GACA-CGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41777 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 41776 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 41717 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || || | || || ||| || | || ||| Sbjct 41716 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGGC 41668 >seq1 Length=6947394 Score = 150 bits (166), Expect = 2e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || ||||||||||| ||||||||| |||| |||||| || Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || | || |||| ||||| ||||| || ||| |||| Sbjct 6690972 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 6691030 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| ||||| ||||| || |||| |||||||| ||||| Sbjct 6691031 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 6691090 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| ||||| |||| || || Sbjct 6691091 CAACATCCAGAAGGAGTCGACCCTCCA 6691117 >seq3 Length=3222897 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 107671 TGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTTCGTCG 107730 |||| ||||| || ||||| | || || |||||| || || |||||||| ||| || Sbjct 747643 TGCCGAGGTCTCCAACGTGGCGGACCTTGGCGTCCGGGGCACCGTGGTCCTTCTTGTACG 747584 Query 107731 GGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGT 107790 ||||||| || ||||||||| ||||||||||| ||| || |||||||| |||| Sbjct 747583 GGTTGAAGTGGGGGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCAAACTCGTGGACGT 747524 Query 107791 GGAAGCCGTGC 107801 ||||||||||| Sbjct 747523 GGAAGCCGTGC 747513 >seq4 Length=2551142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/283 (69%), Gaps = 9/283 (3%) Strand=Plus/Plus Query 133147 TTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACG 133206 ||||| |||||| |||| || || ||||| ||| ||| | || | ||| || Sbjct 1013682 TTCTCCTCCGAGTCCTGCACATACGTCTCGATCAGGAGGCTGTACGTCTCGGCGTGCACC 1013741 Query 133207 TTCTCCATGGCGATTTGAAAGCCGTAAAA-GCACCGCGCCTCGACCACCTGCACTTCTTG 133265 | ||| || | || || |||| || |||| ||||||| | |||||||| || | Sbjct 1013742 TGCTCGATCATCGTCTGGAACGCGTAGAACGCAC-GCGCCTCAGCGACCTGCACCTC--G 1013798 Query 133266 AGCG-AAAC-GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 |||| |||| || || || |||||| ||||||||||| | ||||| || ||| Sbjct 1013799 AGCGCAAACTGCGAGATGAGGTTTTCGCCAACGATGCCGTCCGACGACGCGAAGAACGCC 1013858 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTG 133380 || | | || |||||| |||||||| |||||||||||||| ||||||| || | Sbjct 1013859 AGGATGCGCAGGATGAAGAACCGCTCGTTCTCGTTCAAGCGCTCGTTCCAGTCGTGCAGG 1013918 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 || | | ||||| | ||||||| | ||||| || ||||| Sbjct 1013919 TCGGTCGCGAGGTCGAGCTCCTCGGCCGTCCAGAAGCTCGCCT 1013961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172581174400