Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6 208 8e-49
seq1 150 2e-31
seq3 102 8e-17
seq4 95.1 1e-14
>seq6
Length=1958011
Score = 208 bits (230), Expect = 8e-49
Identities = 390/564 (69%), Gaps = 28/564 (5%)
Strand=Plus/Plus
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAG 132722
|||||| || |||||||||| | || ||| ||| | |||||| || |||||||
Sbjct 63138 CATAAAGTCGAAGGGGTTGGTCGAGTAGTACGTCTTCTCGTTGCCGA---GGGCGACGAG 63194
Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782
||| | |||||| || ||||| ||||| || ||||| | || || | || | |||
Sbjct 63195 CAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGTCCGGCGTTCATGCCAATCAG 63254
Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842
|| || ||||| |||||||| || ||||| || ||| || || ||| ||
Sbjct 63255 CGAGACGGGGAGCGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAAT 63314
Query 132843 -TTCCCTA--ACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| | | | | || | ||| |||| | | | ||| | |||| || ||| |
Sbjct 63315 CTTCTCGATGAGGTCGGGGTGCGGGCGGCGGCGG----AGGTGCGTAAACAGCAGGCAGG 63370
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
|||||||| || | |||||||| | |||||||| ||||| ||| || | ||||
Sbjct 63371 CAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGG 63430
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
||||||||||||| || |||||||| || |||| ||| || |||||| ||||||| ||
Sbjct 63431 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGC 63490
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TGGCTTCTTTGCTGGCGATC 133077
|||||||||| || || || | ||| ||||| | |||| | |||| | | | ||||
Sbjct 63491 CCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGAAGACTTC-TCGTCCGAGATC 63549
Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137
|||||||||||||| |||||||| | |||| |||||| || | || |||||||| ||
Sbjct 63550 CAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTCTCAATGGCGTTGAA- 63608
Query 133138 AAACGGAGTTTC-TCTTCCGAGGA-----ACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191
||| | | | || | | || | ||| |||||||||||| || |||
Sbjct 63609 -----GAGGTACGTGCGGCGGGCATTGTCGCGAATGTACGTGTCGATGAGGAGTGAGTAC 63663
Query 133192 ATTTCCGAGTGTACGTTCTCCATG 133215
| |||||||| | ||||||| ||
Sbjct 63664 GTCTCCGAGTGGATGTTCTCCCTG 63687
Score = 132 bits (146), Expect = 5e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| | ||
Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| |||||| |||||||
Sbjct 42063 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 42005
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| || ||||| |||||||||
Sbjct 42004 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAA 41945
Query 38423 CATCCAAAAGGA 38434
|||||| |||||
Sbjct 41944 CATCCAGAAGGA 41933
Score = 125 bits (138), Expect = 7e-24
Identities = 132/171 (77%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323
||||| ||||| ||||||||| |||| |||||| || | |||| | | | |||| | ||
Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 42272
Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| |||| ||||| ||||| |||||| ||||||| ||||| ||||| | ||| ||
Sbjct 42271 GTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 42212
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
||| ||||| || |||| || ||||| ||||||||||||||| |||||
Sbjct 42211 CAAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 42161
Score = 122 bits (134), Expect = 9e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || ||||| || || || |||| |||||| | ||
Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | | || || | ||| ||||| ||||| || || |||||||
Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGA-TCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || |||| ||||| ||| |||||||||
Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
|||||| ||||| |||| || ||
Sbjct 41488 CATCCAGAAGGAGTCGACTCTCCA 41465
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| || ||||| |||| || ||| | |
Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| || | | | | |||| || |||| ||||| ||||| || || |||||||
Sbjct 41835 GACA-CGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41777
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 41776 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 41717
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| |||| || || | || || ||| || | || |||
Sbjct 41716 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGGC 41668
>seq1
Length=6947394
Score = 150 bits (166), Expect = 2e-31
Identities = 159/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| || || ||||||||||| ||||||||| |||| |||||| ||
Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | |||| | || | || |||| ||||| ||||| || ||| ||||
Sbjct 6690972 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 6691030
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | ||| ||||| ||||| || |||| |||||||| |||||
Sbjct 6691031 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 6691090
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446
||||||||| ||||| |||| || ||
Sbjct 6691091 CAACATCCAGAAGGAGTCGACCCTCCA 6691117
>seq3
Length=3222897
Score = 102 bits (112), Expect = 8e-17
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 107671 TGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTTCGTCG 107730
|||| ||||| || ||||| | || || |||||| || || |||||||| ||| ||
Sbjct 747643 TGCCGAGGTCTCCAACGTGGCGGACCTTGGCGTCCGGGGCACCGTGGTCCTTCTTGTACG 747584
Query 107731 GGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGT 107790
||||||| || ||||||||| ||||||||||| ||| || |||||||| ||||
Sbjct 747583 GGTTGAAGTGGGGGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCAAACTCGTGGACGT 747524
Query 107791 GGAAGCCGTGC 107801
|||||||||||
Sbjct 747523 GGAAGCCGTGC 747513
>seq4
Length=2551142
Score = 95.1 bits (104), Expect = 1e-14
Identities = 195/283 (69%), Gaps = 9/283 (3%)
Strand=Plus/Plus
Query 133147 TTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACG 133206
||||| |||||| |||| || || ||||| ||| ||| | || | ||| ||
Sbjct 1013682 TTCTCCTCCGAGTCCTGCACATACGTCTCGATCAGGAGGCTGTACGTCTCGGCGTGCACC 1013741
Query 133207 TTCTCCATGGCGATTTGAAAGCCGTAAAA-GCACCGCGCCTCGACCACCTGCACTTCTTG 133265
| ||| || | || || |||| || |||| ||||||| | |||||||| || |
Sbjct 1013742 TGCTCGATCATCGTCTGGAACGCGTAGAACGCAC-GCGCCTCAGCGACCTGCACCTC--G 1013798
Query 133266 AGCG-AAAC-GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323
|||| |||| || || || |||||| ||||||||||| | ||||| || |||
Sbjct 1013799 AGCGCAAACTGCGAGATGAGGTTTTCGCCAACGATGCCGTCCGACGACGCGAAGAACGCC 1013858
Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTG 133380
|| | | || |||||| |||||||| |||||||||||||| ||||||| || |
Sbjct 1013859 AGGATGCGCAGGATGAAGAACCGCTCGTTCTCGTTCAAGCGCTCGTTCCAGTCGTGCAGG 1013918
Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423
|| | | ||||| | ||||||| | ||||| || |||||
Sbjct 1013919 TCGGTCGCGAGGTCGAGCTCCTCGGCCGTCCAGAAGCTCGCCT 1013961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172581174400
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