Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq7 293 3e-74
>seq7
Length=1486079
Score = 293 bits (324), Expect = 3e-74
Identities = 602/891 (68%), Gaps = 8/891 (1%)
Strand=Plus/Minus
Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982
|||||||| ||||| || || |||| || | || ||||| | ||||| | |||
Sbjct 876047 GGGGTCATGATACCGCCGGCGGTCTCGATACCCATGGAGAGAGGGGCAACGTCGAGGAGG 875988
Query 6983 AACAGGTCTTGAACAGATTC---GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039
| ||||| || | || | || ||||| | | ||| | || ||||| |
Sbjct 875987 AGGAGGTCCTGGGTGGCCTCCGAGGTC---TCACCGTTGAGGATCGAAGCCTGGACGGCG 875931
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAA 7098
|| ||||| ||||| ||||| |||||||| |||| || | || || | ||
Sbjct 875930 GCACCGTAGGCGACGGCCTCGTCGGGGTTGATCGAGCGGTTGGGCTCACGGCCAGAGAAC 875871
Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158
|| ||||| | | | || || || ||||| || || || |||||||| | |||||
Sbjct 875870 ATG-TCCGAGACGAGCTTCTGGATCTTGGGGATACGAGTGGAACCACCGACAAGGACGAT 875812
Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218
|| || || ||| || || ||||| ||||| || || || ||||| || |||||
Sbjct 875811 CTCGTTGACCGACGACTTGTCAATCTTCGAGTCGCGGAGGACCTTCTCGACGGGCTCCAT 875752
Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278
||||| | |||| || || ||||| ||||| |||||||| || || || ||
Sbjct 875751 GGTCGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATCGAGGTGTA 875692
Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338
||| || | ||||||| | | ||| ||||| || || | || || || | || || |
Sbjct 875691 GAAGTCGATGCCGTCGAAGAGCGAGTCAATCTCGATCGAGGTCTGGGCGGCAGACGAGAG 875632
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398
|| || || || ||||| || || || || | ||| || |||||||| | ||| || ||
Sbjct 875631 GGTGCGTTTGGCACGCTCGCAAGCGGTGCGGAGACGGCGGAGGGCACGAGCGTTGCCCGA 875572
Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458
| || ||||| | || || || ||||| | |||||| | ||| | ||
Sbjct 875571 GAGGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTGGTTGACGAGACGGTTGTC 875512
Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518
||| || |||||||| | || || || || ||||| || ||||| || ||||| || |
Sbjct 875511 GAAGTCCTCACCACCAAGATGGGTGTCACCGGCGGTAGCCTTGACCTCGAAGATGCCCTC 875452
Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578
|||||| | | | ||| ||||| || || || ||||| ||||| || ||||| |||||
Sbjct 875451 CTCAATGGTAAGGAGCGAGACATCGAAGGTTCCTCCACCGAGGTCGAAGATGAGAACGTT 875392
Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638
| | || | || | ||||| ||||||||||| ||||| || || || || || || ||
Sbjct 875391 CTTCTCACCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTT 875332
Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698
|| ||||| || || ||||| ||||| || | || || || || || || || ||
Sbjct 875331 GATGATACGGAGGACGTCGAGGCCGGCAATGGTACCGGCGTCCTTGGTGGCCTGACGCTG 875272
Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758
|| ||||| |||||||| ||||| || || || || | | ||| | || || ||
Sbjct 875271 GGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCCTTGGAGACGGTGCCGCCAAGGTA 875212
Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
| || ||| | || ||||| ||| |||| |||||||| || ||||| ||
Sbjct 875211 AGCCTCGGCGGTCTCCTTCATCTTGATAAGGACCATCGACGAGATCTCCTC 875161
Score = 172 bits (190), Expect = 7e-38
Identities = 200/269 (74%), Gaps = 3/269 (1%)
Strand=Plus/Minus
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||| ||||| | | ||| | ||||| || ||||||| |||| | ||||| |
Sbjct 875042 GATGACCTTGAAGGGCCAGTGCTTCATGTCCGACTGGACCTCGGGGTCGGCGAACTTGCG 874983
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|| || |||||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 874982 ACCAATGAGACGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATGGCGACCTGGTTCTT 874923
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
|| || || ||||| ||||| || | | || ||||| |||||||| ||||| ||
Sbjct 874922 GGCGGCATCACCGATGAGACGCTCCGAGT---CGGTGAACGCAACGTACGAGGGGGTAGT 874866
Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
|| || || |||||||| || ||||| || ||||||||||| ||||||||| |||| ||
Sbjct 874865 GCGGTTACCCTGGTCGTTGGCGATAATCTCGACGCGGTCGTTCTGCCAGACGGCGACACA 874806
Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144
||| ||||| ||||| || ||||| ||||
Sbjct 874805 CGAGTACGTCGTTCCCAAGTCAATTCCGA 874777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132522129400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |