Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 293 3e-74 >seq7 Length=1486079 Score = 293 bits (324), Expect = 3e-74 Identities = 602/891 (68%), Gaps = 8/891 (1%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| ||||| || || |||| || | || ||||| | ||||| | ||| Sbjct 876047 GGGGTCATGATACCGCCGGCGGTCTCGATACCCATGGAGAGAGGGGCAACGTCGAGGAGG 875988 Query 6983 AACAGGTCTTGAACAGATTC---GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 | ||||| || | || | || ||||| | | ||| | || ||||| | Sbjct 875987 AGGAGGTCCTGGGTGGCCTCCGAGGTC---TCACCGTTGAGGATCGAAGCCTGGACGGCG 875931 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAA 7098 || ||||| ||||| ||||| |||||||| |||| || | || || | || Sbjct 875930 GCACCGTAGGCGACGGCCTCGTCGGGGTTGATCGAGCGGTTGGGCTCACGGCCAGAGAAC 875871 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || ||||| | | | || || || ||||| || || || |||||||| | ||||| Sbjct 875870 ATG-TCCGAGACGAGCTTCTGGATCTTGGGGATACGAGTGGAACCACCGACAAGGACGAT 875812 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || || || ||| || || ||||| ||||| || || || ||||| || ||||| Sbjct 875811 CTCGTTGACCGACGACTTGTCAATCTTCGAGTCGCGGAGGACCTTCTCGACGGGCTCCAT 875752 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || ||||| ||||| |||||||| || || || || Sbjct 875751 GGTCGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATCGAGGTGTA 875692 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | ||||||| | | ||| ||||| || || | || || || | || || | Sbjct 875691 GAAGTCGATGCCGTCGAAGAGCGAGTCAATCTCGATCGAGGTCTGGGCGGCAGACGAGAG 875632 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || || || || ||||| || || || || | ||| || |||||||| | ||| || || Sbjct 875631 GGTGCGTTTGGCACGCTCGCAAGCGGTGCGGAGACGGCGGAGGGCACGAGCGTTGCCCGA 875572 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | || ||||| | || || || ||||| | |||||| | ||| | || Sbjct 875571 GAGGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTGGTTGACGAGACGGTTGTC 875512 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || |||||||| | || || || || ||||| || ||||| || ||||| || | Sbjct 875511 GAAGTCCTCACCACCAAGATGGGTGTCACCGGCGGTAGCCTTGACCTCGAAGATGCCCTC 875452 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | ||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 875451 CTCAATGGTAAGGAGCGAGACATCGAAGGTTCCTCCACCGAGGTCGAAGATGAGAACGTT 875392 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | | || | || | ||||| ||||||||||| ||||| || || || || || || || Sbjct 875391 CTTCTCACCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTT 875332 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || || ||||| ||||| || | || || || || || || || || Sbjct 875331 GATGATACGGAGGACGTCGAGGCCGGCAATGGTACCGGCGTCCTTGGTGGCCTGACGCTG 875272 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| |||||||| ||||| || || || || | | ||| | || || || Sbjct 875271 GGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCCTTGGAGACGGTGCCGCCAAGGTA 875212 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || ||| | || ||||| ||| |||| |||||||| || ||||| || Sbjct 875211 AGCCTCGGCGGTCTCCTTCATCTTGATAAGGACCATCGACGAGATCTCCTC 875161 Score = 172 bits (190), Expect = 7e-38 Identities = 200/269 (74%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||| | ||||| || ||||||| |||| | ||||| | Sbjct 875042 GATGACCTTGAAGGGCCAGTGCTTCATGTCCGACTGGACCTCGGGGTCGGCGAACTTGCG 874983 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || |||||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 874982 ACCAATGAGACGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATGGCGACCTGGTTCTT 874923 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || ||||| ||||| || | | || ||||| |||||||| ||||| || Sbjct 874922 GGCGGCATCACCGATGAGACGCTCCGAGT---CGGTGAACGCAACGTACGAGGGGGTAGT 874866 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || ||||| || ||||||||||| ||||||||| |||| || Sbjct 874865 GCGGTTACCCTGGTCGTTGGCGATAATCTCGACGCGGTCGTTCTGCCAGACGGCGACACA 874806 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 ||| ||||| ||||| || ||||| |||| Sbjct 874805 CGAGTACGTCGTTCCCAAGTCAATTCCGA 874777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132522129400