Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 246 4e-60 seq6 122 1e-22 seq9 114 2e-20 seq4 98.7 1e-15 seq5 91.5 2e-13 >seq1 Length=6947394 Score = 246 bits (272), Expect = 4e-60 Identities = 692/1047 (66%), Gaps = 29/1047 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || ||||||||||||| || || | ||||| || Sbjct 1522922 CCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGACAAGGTC 1522863 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | | || |||| |||||| | || |||||||| Sbjct 1522862 ATTGAGACTTACAACCTCATGTCGGAGCGCTAC-TTCACCCACGCCTCGCCTACCCTCTT 1522804 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||||||||| || | ||||| ||||| || |||||| | || | |||||||| Sbjct 1522803 CAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGAGGA 1522744 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| || ||||| ||||| ||| || || Sbjct 1522743 CTCGATCGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGG 1522684 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACA 111908 |||||||| | |||||||| | || | |||| | | |||| ||| ||||| Sbjct 1522683 CGGTATCGGTCTCCACATCCACAACATCCGTGCCA--AGGGTTCGTACATTGCCGGTACC 1522626 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| | || | |||||| | || ||||| || | || |||| || || || || Sbjct 1522625 AACGGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCTCGTTAC 1522566 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | || ||| | | || | | || |||| |||||||| ||| Sbjct 1522565 GTCGACCAGGGAGGCAACAAGCGCCCC---GGTGCCTTTGCCATCTACCTTGAGCCTTGG 1522509 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| || || | || ||||| || | || ||||| || | ||||||| | | Sbjct 1522508 CACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTC-G 1522450 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||| || || ||||||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 1522449 TGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 1522390 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 |||| | ||| | ||| | || || | | || ||||||||||| || | | Sbjct 1522389 CGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTC 1522330 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACG 112259 ||||||||||| || |||||| ||||||||| | | | | | | | || ||| Sbjct 1522329 GGAGGAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCG-AGGGCAAGGGTC-GCAAGACC 1522272 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | || | || | | ||| | || || || | || || ||||||||| || Sbjct 1522271 AT-CAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGGTGGCCC 1522213 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| |||||| |||| ||| || || || | ||||| || Sbjct 1522212 CTTCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGGTACCAT 1522153 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||| ||||||||||| || || ||| | || | | || ||| || || Sbjct 1522152 CAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGTTGCCGT 1522093 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 112498 || ||||| || || ||||||||||| | ||| || |||| || || | || Sbjct 1522092 CTGCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGTCGACTTTGAGAACAACACCTACGA 1522033 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | || |||||||| | || || ||||| || ||||| || | || || Sbjct 1522032 CTTCAAGAAGCTCCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACTGTGTCATCTC 1521973 Query 112559 TAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 | || | |||||||| ||| || || || || || ||| | ||||| || | Sbjct 1521972 GCGCAACTACTACCCCGTCCCCGAG---GCCCGCAACTCGAACATGCGTCACCGCCCCGT 1521916 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 ||||||||||||||| ||||| || || Sbjct 1521915 TGGTCTCGGTGTCCAGGGTCTTGCCGA 1521889 >seq6 Length=1958011 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||| ||||||||||| || | || ||||| || ||||| ||||||||||| || || Sbjct 63531 TTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTC 63472 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || | | || | |||||||||||||| || |||||||| |||||| |||||| || Sbjct 63471 GTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAA 63412 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || || || |||||||| |||||| || ||||| Sbjct 63411 CGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGC 63370 >seq9 Length=1289175 Score = 114 bits (126), Expect = 2e-20 Identities = 321/490 (66%), Gaps = 2/490 (0%) Strand=Plus/Minus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||| ||||| || | |||||| | |||||||||||| | || || | ||| Sbjct 1226948 AACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGT 1226889 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | || ||||| || | ||||| |||| | ||||||||||| | || || | Sbjct 1226888 ACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGG 1226829 Query 175959 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017 | | |||||| | |||| ||| | || || || || ||||| | | | | Sbjct 1226828 GGTGGAAGATCGTGCGGGTCAT-GCGGGGGACGTTGGTGAAAATATAACGAGGGCTGGCC 1226770 Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 |||||||| |||||| | || ||||| |||||||| ||||| ||||| ||||| Sbjct 1226769 GCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATG 1226710 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || | |||| | || | ||||||||| | | | | |||| Sbjct 1226709 TTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCG 1226650 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 ||||||||||| || ||||||| | || | | | | ||| || || || || || Sbjct 1226649 CCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCC 1226590 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | |||||| || ||| || ||| |||| |||||||| || ||||||||| || Sbjct 1226589 TTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTGCGCTGACCAGGCTTGAGGCCG 1226530 Query 176258 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 176317 || || | | ||| ||||| | || |||| |||| || ||| |||||| Sbjct 1226529 TCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTCCTTG 1226470 Query 176318 TGTACAAAGT 176327 | ||||||| Sbjct 1226469 TTGACAAAGT 1226460 >seq4 Length=2551142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 102250 || |||||||| || ||||| ||||||||||| || || || |||| | || | ||||| Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCATCTTCTGGCT 1013465 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 ||||||||| || ||||||| || || || ||||||||||| ||||| || ||||| Sbjct 1013464 CAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGA 1013405 Query 102311 GGGACTCCACCAAGAGTTTGC 102331 ||| | ||| || ||||| Sbjct 1013404 GGGCATGCACACCGACTTTGC 1013384 >seq5 Length=2075171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 ||| || | ||| ||||||||||| | ||||| ||| || || || | | ||| Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || || || || |||||| || || ||||| || |||||||||||||| | | Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847 Query 16175 GGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | || || ||| |||||| || || | ||||| || | || |||||| || Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||| ||||| ||| |||| ||||| ||| || || || ||||||||||| Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742128425200