Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 217 2e-51 seq5 140 4e-28 seq9 107 2e-18 >seq1 Length=6947394 Score = 217 bits (240), Expect = 2e-51 Identities = 615/936 (66%), Gaps = 23/936 (2%) Strand=Plus/Plus Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 || || |||||||| ||||||||||||| |||||| || |||||| ||| || || Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGCC 1521948 Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223 |||||||| ||||||| |||||| | | ||| ||||| || || ||| Sbjct 1521949 TCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTG 1522008 Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283 ||||| || ||||| || | | | ||| | || || |||| | |||| | ||| Sbjct 1522009 GTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGG 1522068 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 ||||| || || ||||| ||||| || | | |||||| | ||| || | || Sbjct 1522069 AGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATC 1522128 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403 || || || | |||||| ||| ||| ||||| || || ||| ||||| ||| |||| Sbjct 1522129 TCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTG 1522188 Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463 || ||||| ||||||||| | ||| |||||| || ||||| | || || |||| Sbjct 1522189 GCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAG 1522248 Query 110464 TTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGTAC 110517 ||| | | || | | | | || | |||| |||| |||| ||||||| Sbjct 1522249 AACCAGAGCTTCTGAGCC-----TTGATGGTCTTGCGA-CCCTTGCCCTCGCGCTCGTAC 1522302 Query 110518 TTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCG 110577 || ||| | ||||||| |||| || || || || ||||| || | | Sbjct 1522303 TTCTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCA 1522362 Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || || | ||||| ||| | ||| | |||| || | ||||||||| ||||| || ||| Sbjct 1522363 GGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 1522422 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || |||| |||||||| |||| |||| || | || ||||| ||| || Sbjct 1522423 CAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 1522482 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC---- 110753 || | ||||| | || || | |||||| || || || |||| || | || || Sbjct 1522483 TCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGG 1522542 Query 110754 --CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 ||| | | || |||||| || || || || || || | | | | | |||||| Sbjct 1522543 CGCTT--GTTG-CCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATG 1522599 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 || | ||| || | || | ||| || ||||| ||| || |||||||| ||| Sbjct 1522600 GGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATG 1522659 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAG 110930 | |||||| || | ||| ||||| || || ||| || || || || ||| |||| Sbjct 1522660 TTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT-TGAG 1522718 Query 110931 TGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACAT 110990 || | || ||||| || ||||| || |||| |||| | || ||||| || ||||| Sbjct 1522719 GGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACAT 1522778 Query 110991 CTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 ||| || || || || || |||||||| ||||| Sbjct 1522779 CTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGG 1522814 >seq5 Length=2075171 Score = 140 bits (154), Expect = 4e-28 Identities = 327/484 (68%), Gaps = 17/484 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | || ||| || || | ||| ||||| Sbjct 653146 AATGTGACGGTCGAAACGGCCGGGACGCATGAGCGCAGGGTCGAGCACGTCGGGGCGGTT 653087 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 ||| |||| | || |||||| || || |||||||||||| || || || Sbjct 653086 GGTACCGGCCAGCACGACAATGTGCTCCTTGCTGCTGAAACCGTCCATCTCAACCAGGAG 653027 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGAACG 11669 |||||||| |||| || ||||| ||||| | || || | | |||| ||| Sbjct 653026 CTGGTTGAGCGTCGACTCGCGCTCGTCGTTACCGC-CAAACTGTCCGCCCTTGCC--ACG 652970 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 ||| |||| |||||||||||||| | ||| | ||||||||| ||| | || Sbjct 652969 GGCCTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCC-TGG 652911 Query 11730 CTGTT-CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 | || |||| || || || |||||| | || ||||| ||||||||||| || || | Sbjct 652910 CGGTCGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACT 652851 Query 11789 TTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || || || | |||||| || || | |||||| ||| | || ||||| Sbjct 652850 CGGAACCCGAG-ACGGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGC 652792 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC- 11906 || |||||||| ||||| || | || | ||| | |||||| || ||||||||||| || Sbjct 652791 AGCGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCCG 652732 Query 11907 -ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 |||| ||| | | |||| ||||||||| | |||| |||| || ||||||| Sbjct 652731 AGCTTC--TCGTACTTCGCCGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCT 652674 Query 11966 TGGC 11969 |||| Sbjct 652673 TGGC 652670 >seq9 Length=1289175 Score = 107 bits (118), Expect = 2e-18 Identities = 298/449 (66%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 167340 GGGGATGTAGCAACTGAAACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGG 167399 |||||| || ||| |||| ||||||||||| || | |||||| | | |||||| || Sbjct 1226965 GGGGATCGAGGTACTCCAACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGG 1226906 Query 167400 TAGAGTTGGCATGTAAAAGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAG 167459 | || || | || | ||||| || || | ||||| |||| | ||||||||| Sbjct 1226905 AATGGTGGGAAGATAGTACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAG 1226846 Query 167460 AATGGCATCATCTTTGGGATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGA 167518 |||||| || || ||| | ||||| | | || | | | | || | | || || || | Sbjct 1226845 AATGGCGTCGTCGGCGGGGTGGAAGATCGTGCGGGTCATGCGGGGGACG-TTGGTGAAAA 1226787 Query 167519 TGT-ACCTCGTCTGAGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACAT 167577 | | || | ||| | ||||||||| |||||| | ||| ||||| || ||||| Sbjct 1226786 TATAACGAGGGCTG-GCCGCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTG 1226728 Query 167578 GGCTCGAGAAGATTGATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT- 167636 ||||||||||| |||||||| || || ||| | | ||| | || ||||| Sbjct 1226727 GGCTCGAGAAGGTTGATGTTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTG 1226668 Query 167637 TTCAGCGA--GGGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCC 167694 || | | || |||||||||||||||| || |||| || | || || | | Sbjct 1226667 GACATCAAACTGG---CTTCGCCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCG 1226611 Query 167695 AACTGTGCAACCTTCATCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTG 167754 | ||| || ||||| || || | ||||| || | ||| || | |||| |||||| Sbjct 1226610 AGCTGGGCGACCTTGATTTCCTTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTG 1226551 Query 167755 CGTTGAGAAGGTTTGAGACCATCTGCCAC 167783 || ||| ||| ||||| || || || || Sbjct 1226550 CGCTGACCAGGCTTGAGGCCGTCGGCAAC 1226522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975742323000