Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 230 3e-55
seq6 100 3e-16
seq5 91.5 2e-13
seq4 84.2 3e-11
>seq1
Length=6947394
Score = 230 bits (254), Expect = 3e-55
Identities = 724/1113 (65%), Gaps = 29/1113 (3%)
Strand=Plus/Plus
Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339
|| || ||||| || ||||| | ||||| || | ||| ||||| || || || || ||
Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC- 1521947
Query 106340 GTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396
||| ||||| || | || | ||||| | || || || ||||| || | |
Sbjct 1521948 --CTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACC 1522005
Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456
|| ||||| || || || || | | || | ||| |||| | |||| |
Sbjct 1522006 TTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCA 1522065
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| || ||||| || || | ||||| || || ||| || | | |||||| |
Sbjct 1522066 GGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATG 1522125
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || || | |||||| ||| || || |||| | || ||||| ||| |
Sbjct 1522126 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGG 1522185
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||| || ||||||||||||||| |||| || ||||| ||||| | || || ||
Sbjct 1522186 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATG 1522245
Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTA 106692
| ||| | | || | | || | |||| ||| ||| | || ||| ||||||
Sbjct 1522246 GAGAACCAGAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTA 1522301
Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTG 106750
||| |||||| || ||||||||||| | | | |||| |||||||| || || |
Sbjct 1522302 CTTCTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCCGAGAGACCGGGGCACTCG 1522359
Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810
| || || | || | ||| | ||| | |||| || ||||||||||| ||||| ||
Sbjct 1522360 GCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGG 1522419
Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870
||||| |||| | ||||| || | | ||| |||| || | || ||||| ||
Sbjct 1522420 ATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGG 1522479
Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 106929
| || ||||| || | || || |||||||| |||||||| |||| || | | ||
Sbjct 1522480 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCG 1522539
Query 106930 -----CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983
||| | | | ||| | | || | || || || || |||| || | || ||
Sbjct 1522540 GGGCGCTTGTTGCCTCCCTGGTCGA----CGTAACGAGCAGTAGCGTCGTATGCACGGAG 1522595
Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043
||| || | |||||| | || | ||| || || || ||| || ||||| |
Sbjct 1522596 CATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACG 1522655
Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103
| | |||||||| | || ||||| || || ||| ||||| || || || | |
Sbjct 1522656 GATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTT 1522715
Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163
|| || | |||||||||| ||| ||||||||||| |||||| ||||||||| ||
Sbjct 1522716 GAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGA 1522775
Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223
|||||| || | || |||||||| ||||||||||| || | ||||| |||| |
Sbjct 1522776 CATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCG 1522835
Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283
| ||||| || ||| ||||| | ||| ||||||| || |||||||| |||||
Sbjct 1522836 CTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGAT 1522895
Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343
| ||| ||||| | ||||| ||||| || || |||| |||| || | ||
Sbjct 1522896 CGACACGCGCATGATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAG 1522955
Query 107344 ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
|| ||||||||| |||| ||||||||
Sbjct 1522956 GTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTA 1522988
>seq6
Length=1958011
Score = 100 bits (110), Expect = 3e-16
Identities = 125/171 (73%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||| || || ||||| || || || |||||| || ||
Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
|||||||| || |||||||| | ||| | || | | || || || |||||||||||
Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT 117443
||||| || |||||||||| || ||||| || || || ||||||
Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTT 63536
>seq5
Length=2075171
Score = 91.5 bits (100), Expect = 2e-13
Identities = 164/237 (69%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421
||| || | ||| ||||||||||| | ||||| ||||| || || | | |||| |
Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907
Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481
| || || ||||| || | || || ||||| || |||||||||||||| | |
Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847
Query 9482 GGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538
| || || ||| |||||| || || | ||||| || | || |||||| ||
Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790
Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
|||||||| ||||| ||| |||| ||||| ||| || || || |||||||||||
Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733
>seq4
Length=2551142
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| | ||||| || || || || || || || || || |||||
Sbjct 1013384 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCG 1013443
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392
||||||| || |||||||| | ||| | || || ||| || || || |||||||||||
Sbjct 1013444 CGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCA-AACGAGCCCGAGAAGAAGAT 1013502
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCG 117422
||||| || ||||||||||||| |||||
Sbjct 1013503 GCCCTCGACGCACGCAAACGCAATCAGGCG 1013532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980541883400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |