Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 230 3e-55 seq6 100 3e-16 seq5 91.5 2e-13 seq4 84.2 3e-11 >seq1 Length=6947394 Score = 230 bits (254), Expect = 3e-55 Identities = 724/1113 (65%), Gaps = 29/1113 (3%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| || ||||| | ||||| || | ||| ||||| || || || || || Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC- 1521947 Query 106340 GTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| ||||| || | || | ||||| | || || || ||||| || | | Sbjct 1521948 --CTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACC 1522005 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 || ||||| || || || || | | || | ||| |||| | |||| | Sbjct 1522006 TTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCA 1522065 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || || ||| || | | |||||| | Sbjct 1522066 GGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATG 1522125 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| ||| || || |||| | || ||||| ||| | Sbjct 1522126 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGG 1522185 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||||||| |||| || ||||| ||||| | || || || Sbjct 1522186 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATG 1522245 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTA 106692 | ||| | | || | | || | |||| ||| ||| | || ||| |||||| Sbjct 1522246 GAGAACCAGAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTA 1522301 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTG 106750 ||| |||||| || ||||||||||| | | | |||| |||||||| || || | Sbjct 1522302 CTTCTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCCGAGAGACCGGGGCACTCG 1522359 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | || || | || | ||| | ||| | |||| || ||||||||||| ||||| || Sbjct 1522360 GCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGG 1522419 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 ||||| |||| | ||||| || | | ||| |||| || | || ||||| || Sbjct 1522420 ATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGG 1522479 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 106929 | || ||||| || | || || |||||||| |||||||| |||| || | | || Sbjct 1522480 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCG 1522539 Query 106930 -----CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||| | | | ||| | | || | || || || || |||| || | || || Sbjct 1522540 GGGCGCTTGTTGCCTCCCTGGTCGA----CGTAACGAGCAGTAGCGTCGTATGCACGGAG 1522595 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| || | |||||| | || | ||| || || || ||| || ||||| | Sbjct 1522596 CATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACG 1522655 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 | | |||||||| | || ||||| || || ||| ||||| || || || | | Sbjct 1522656 GATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTT 1522715 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 || || | |||||||||| ||| ||||||||||| |||||| ||||||||| || Sbjct 1522716 GAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGA 1522775 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 |||||| || | || |||||||| ||||||||||| || | ||||| |||| | Sbjct 1522776 CATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCG 1522835 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 | ||||| || ||| ||||| | ||| ||||||| || |||||||| ||||| Sbjct 1522836 CTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGAT 1522895 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 | ||| ||||| | ||||| ||||| || || |||| |||| || | || Sbjct 1522896 CGACACGCGCATGATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAG 1522955 Query 107344 ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || ||||||||| |||| |||||||| Sbjct 1522956 GTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTA 1522988 >seq6 Length=1958011 Score = 100 bits (110), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||| || || ||||| || || || |||||| || || Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || |||||||| | ||| | || | | || || || ||||||||||| Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT 117443 ||||| || |||||||||| || ||||| || || || |||||| Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTT 63536 >seq5 Length=2075171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||| || | ||| ||||||||||| | ||||| ||||| || || | | |||| | Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 | || || ||||| || | || || ||||| || |||||||||||||| | | Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847 Query 9482 GGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | || || ||| |||||| || || | ||||| || | || |||||| || Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||||| ||||| ||| |||| ||||| ||| || || || ||||||||||| Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733 >seq4 Length=2551142 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||| || || || || || || || || || ||||| Sbjct 1013384 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAACGTCAGGCCG 1013443 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 ||||||| || |||||||| | ||| | || || ||| || || || ||||||||||| Sbjct 1013444 CGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCA-AACGAGCCCGAGAAGAAGAT 1013502 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCG 117422 ||||| || ||||||||||||| ||||| Sbjct 1013503 GCCCTCGACGCACGCAAACGCAATCAGGCG 1013532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980541883400