Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 147 5e-30
seq1 129 1e-24
seq9 93.3 9e-14
>seq6
Length=1958011
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| |||||||| || || || ||||| |||| ||| || | || || |||
Sbjct 41915 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCG 41974
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || |||||||| || ||||| |||
Sbjct 41975 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 42034
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| || || || |||||||| | |||||
Sbjct 42035 ATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTG 42094
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 42095 CCGGTGAGGGTCTTGACGAAGATCTGCAT 42123
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| |||||||| || || || ||||| |||| || || | || || |||
Sbjct 42143 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCG 42202
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 42203 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 42262
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| |||||||||||||| || || || ||||| | |||||
Sbjct 42263 ATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 42322
Query 195112 CCTGT 195116
|| ||
Sbjct 42323 CCGGT 42327
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || || || ||||| || | || || | ||||| |||
Sbjct 41687 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCG 41746
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || || ||||| ||||| || || || ||||| ||
Sbjct 41747 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 41806
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || || |||||||| || || || || || | ||||||
Sbjct 41807 ATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTG 41866
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || ||||| | |||||
Sbjct 41867 CCGGTCAAAGTCTTGACGAAGATCTGCAT 41895
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||||||||| ||||| ||||| || || || ||||| |||| || || |
Sbjct 41449 GAGTCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCG 41508
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || ||||||||||| || ||||| || || || || ||||| ||||| || || ||
Sbjct 41509 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTC 41568
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| || || || ||| ||||| || || ||||| || || || || || ||
Sbjct 41569 CTTGTCCTGGATCTTGCTCTTAACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGT 41628
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||| || || | || || || || | |||||
Sbjct 41629 AATCGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 41667
>seq1
Length=6947394
Score = 129 bits (142), Expect = 1e-24
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| || || || ||||| || | ||| || | || || |||
Sbjct 6691123 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 6691064
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 6691063 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6691004
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || |||||||| || || || ||||| | |||||
Sbjct 6691003 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 6690944
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || | || || ||||| | |||||||
Sbjct 6690943 CCCGTGAGGGTCTTGACGAAGATCTGCATTT 6690913
>seq9
Length=1289175
Score = 93.3 bits (102), Expect = 9e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || | || || ||||||||||| || |||||||| || || || |
Sbjct 761762 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 761703
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || || ||||| || ||||| || || || ||||||||| || || |||||||
Sbjct 761702 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCG 761643
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | ||||| || ||
Sbjct 761642 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 761609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481102466845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |