Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 2e-21
seq6 104 2e-17
>seq1
Length=6947394
Score = 116 bits (128), Expect = 2e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||||||| | || | || || ||||| || ||||| ||
Sbjct 6691105 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6691046
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 6691045 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 6690986
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| || |||| ||| ||||| || |||||||| ||||| ||
Sbjct 6690985 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 6690926
Query 34971 AAGATCTGCATATT 34984
||||||||||| ||
Sbjct 6690925 AAGATCTGCATTTT 6690912
>seq6
Length=1958011
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837
||||| ||| || ||||| ||||| ||||| |||||| | || | || || |||||
Sbjct 41920 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTG 41979
Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897
|| ||||| || || || || |||||||| | || | ||||||||||| ||||||
Sbjct 41980 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 42039
Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957
| |||||| | || | || | ||| || || | ||| ||||| || || ||
Sbjct 42040 CGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 42099
Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982
||| ||||| || ||||||||||||
Sbjct 42100 GAGGGTCTTGACGAAGATCTGCATA 42124
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||| || | || |||| || ||||| || ||||| ||
Sbjct 41705 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 41764
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||| || |||
Sbjct 41765 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTG 41824
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | |||||| |||| || || || || || || | |||||| ||
Sbjct 41825 TCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACG 41884
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 41885 AAGATCTGCATA 41896
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || | || | || || ||||| || ||||| ||
Sbjct 41477 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 41536
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||| || |||
Sbjct 41537 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTTG 41596
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || |||| || || || || || || || |||||||||
Sbjct 41597 TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCACA 41656
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 41657 AAGATCTGCAT 41667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633461523480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |