Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq6 104 2e-17 >seq1 Length=6947394 Score = 116 bits (128), Expect = 2e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 6691105 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6691046 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 6691045 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 6690986 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| ||| ||||| || |||||||| ||||| || Sbjct 6690985 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 6690926 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 6690925 AAGATCTGCATTTT 6690912 >seq6 Length=1958011 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| |||||| | || | || || ||||| Sbjct 41920 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTG 41979 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || |||||||| | || | ||||||||||| |||||| Sbjct 41980 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 42039 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | |||||| | || | || | ||| || || | ||| ||||| || || || Sbjct 42040 CGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 42099 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| || |||||||||||| Sbjct 42100 GAGGGTCTTGACGAAGATCTGCATA 42124 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| || | || |||| || ||||| || ||||| || Sbjct 41705 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 41764 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 41765 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTG 41824 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| |||| || || || || || || | |||||| || Sbjct 41825 TCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACG 41884 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 41885 AAGATCTGCATA 41896 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || || ||||| || ||||| || Sbjct 41477 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 41536 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 41537 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTTG 41596 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || || || || ||||||||| Sbjct 41597 TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCACA 41656 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 41657 AAGATCTGCAT 41667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633461523480