Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 >seq2 Length=4354190 Score = 105 bits (116), Expect = 5e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 ||||||| || |||||||| | ||||||||| |||||||| || |||||||| ||||| Sbjct 191142 TGTACTCGGCCCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGC 191201 Query 30218 CCCTGTGCTCGAAGCCCCTCTTG-TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || |||| ||| ||||| | | || | | || | | |||||| |||||||||| Sbjct 191202 GCCGGTGCCCGA-GCCCCACGCGGTCGAGGTACTCGCGGCTCCCGTTGCCGTCCCAGATG 191260 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | || ||||| ||| ||| | | || ||| || ||| |||||||||||| Sbjct 191261 TGCACGCCCTTGGCGGCCAGCGCCGCGCCGTCCGTGTTGCCCGAGACAAACCACAGCAGC 191320 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||| | |||| | | ||||| | |||||| || ||||| || Sbjct 191321 TCCTCAATGACGCCGCGCGTGAAGACGCGCTTGGTGGTCAGGAGCGG 191367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617425699055