Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=4354190 Score = 111 bits (122), Expect = 2e-19 Identities = 172/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 80744 AGGATGACCTTGACCTCGCCGGTGTAGTCCTCGTCCACCACGCCGGCCAGGACCCCGATG 80803 |||| |||||||||||||||| |||||| |||| || ||||| || ||| ||| Sbjct 3288428 AGGACGACCTTGACCTCGCCGCGGTAGTCGGCGTCAACTACGCCCGCGCCGACATTGATA 3288487 Query 80804 CC---CTTGACGCCCAGGCCCGAGCGCGGGGCGACGCGGGCGTAGGTTCCCTCGGGCGCG 80860 || |||| || |||||||||||||||| |||| |||| |||| || ||| | ||| | Sbjct 3288488 CCGTGCTTGGCGGCCAGGCCCGAGCGCGGCGCGATGCGGCCGTACGTGCCCGCCGGCACC 3288547 Query 80861 GTGATCGAGAGGCCCGTCGACAGCAGGGCGCGATCGCCGGGGTTCAGGCGCACCGTCGTC 80920 | || | || |||||| | |||| |||| ||| | | || || || ||| | Sbjct 3288548 GCGACGGCGATCTGCGTCGAGACCAGGTCGCGCCCGCGTGCGGGCA-GCACAATGTC--C 3288604 Query 80921 TCGCCGTCGTAATAGACGTCCAGGCCGGCGGCCTTGGGCGAGCCGCGCGTCGGGAGCTTG 80980 ||| || || || | ||| ||| || | | |||||||||||||||||||| | || Sbjct 3288605 TCGGCGGCG---TACAGGTCGTAGCCAGCCGACAGGGGCGAGCCGCGCGTCGGGACCGTG 3288661 Query 80981 GC 80982 || Sbjct 3288662 GC 3288663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700444493555400