Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=4354190 Score = 111 bits (122), Expect = 2e-19 Identities = 172/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 82153 AGGATGACCTTGACCTCGCCGGTGTAATCCTCGTCCACCACGCCGGCCAGGACCCCGATG 82212 |||| |||||||||||||||| ||| || |||| || ||||| || ||| ||| Sbjct 3288428 AGGACGACCTTGACCTCGCCGCGGTAGTCGGCGTCAACTACGCCCGCGCCGACATTGATA 3288487 Query 82213 CC---CTTGACGCCCAGGCCCGAGCGCGGGGCGACGCGGGCGTAGGTTCCCTCGGGCGCG 82269 || |||| || |||||||||||||||| |||| |||| |||| || ||| | ||| | Sbjct 3288488 CCGTGCTTGGCGGCCAGGCCCGAGCGCGGCGCGATGCGGCCGTACGTGCCCGCCGGCACC 3288547 Query 82270 GTGATCGAGAGGCCCGTCGACAGCAGGGCGCGATCGCCGGGGTTCAGGC-GCACCGTCTT 82328 | || | || |||||| | |||| || |||| | || | ||| |||| | | Sbjct 3288548 GCGACGGCGATCTGCGTCGAGACCAGGTCG----CGCCCGCGTGCGGGCAGCACAATGTC 3288603 Query 82329 CTCGCCGTCGTAATAGACGTCCAGGCCGGCGGCCTTGGGCGAGCCGCGCGTCGGGAGCTT 82388 |||| || || || | ||| ||| || | | |||||||||||||||||||| | | Sbjct 3288604 CTCGGCGGCG---TACAGGTCGTAGCCAGCCGACAGGGGCGAGCCGCGCGTCGGGACCGT 3288660 Query 82389 GGC 82391 ||| Sbjct 3288661 GGC 3288663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709721289496800