Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 298 1e-75 seq6 241 2e-58 seq4 116 7e-21 >seq1 Length=6947394 Score = 298 bits (330), Expect = 1e-75 Identities = 1121/1736 (65%), Gaps = 49/1736 (3%) Strand=Plus/Plus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || ||||| |||||| ||||| | | | ||| || || | ||| Sbjct 1521283 AGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCAGCAAGGTCA 1521342 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | |||| || | |||||| ||||||||| |||| | |||| ||| || ||| Sbjct 1521343 ATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTGTAGATGGCCTTGATGTCGTCGGGG 1521402 Query 212808 AAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTATGGTC-AGCTGCAGGCGCATGTCC 212864 | || || |||| ||| | || || || | | | | |||||| ||| ||| Sbjct 1521403 ATACCAGGAATGTGCTGGATGGAACCACCCGAAGCAATGACGAGCTGCTT---CATCTCC 1521459 Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTT--GA-CCAGGTGAGGGTTGACTATCTG 212920 |||| |||||| || | | ||| ||| || ||||| || ||| | ||| Sbjct 1521460 TCGTCCCAGAGACCAAGGTTGATGAGGTCACGAAGGAGCCAGG----GGCAGACGACCTG 1521515 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 |||||||||||| || || | | | ||| | | || ||||||||||||| || ||| Sbjct 1521516 GAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCGAAGCACTC 1521575 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 ||| || |||||||| | || ||| |||||||| || || || ||||| ||| Sbjct 1521576 GTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCATAGGGGCAACGAGGAGCGAGTT 1521635 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | || ||||||| | | || || ||||| |||||| ||| | | | || Sbjct 1521636 GCGGACACCGTGCTTGGCAATCTTCTCACGGAGCTCGTCCCAGTTCCAGAGGTCGGT-AG 1521694 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | | || |||||| | ||| ||||| | |||| | | ||| || Sbjct 1521695 GAACGCG--------GTTCCAGAGGTCGAACTGAAGCTTGCCCTGCGAGATGGGCGAACC 1521746 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || ||| |||| ||||| |||| ||| |||| ||| || |||| || || ||||| Sbjct 1521747 CTCGTACGAGGGGTAGGTGCCAGCCTCGACAGCCATCTCACACGACGACTCGAGAGCAGC 1521806 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 || ||||||||| || || |||| |||||||| || | || || |||||| Sbjct 1521807 GTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGACGAGCAGCGGGCGAGTCGAAGGG 1521866 Query 213281 CATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339 ||| | || || || || || || |||||||| |||| || | ||| | || Sbjct 1521867 CATGCGGAGAGCCATG-AAGGTGTCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGT 1521925 Query 213340 GTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 | | || ||| || ||| | ||| | |||||| |||||| ||||| || Sbjct 1521926 GACGCATGTTCGAGTTGCGGGCCTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGT 1521985 Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC 213459 |||||| |||| | || ||||||| | | || | || | | | | || | Sbjct 1521986 CGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGT 1522045 Query 213460 CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519 | | | ||||| |||| || ||||| ||| |||||||| ||||| ||||| | Sbjct 1522046 TCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGT 1522105 Query 213520 -GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGG 213578 | ||| | |||||| |||||||| ||||| |||||| | |||||| |||||| Sbjct 1522106 CGGGAGAA-GAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGG 1522164 Query 213579 TTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638 | ||| ||||| ||||| |||||| | ||||||||||||||| ||||| || ||| Sbjct 1522165 TGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTC 1522224 Query 213639 TCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 ||| ||||| | | || || | |||||| | | ||||||| | || | Sbjct 1522225 TCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCTTGA----TGGTCTTGCG 1522280 Query 213699 GCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCT 213757 | | | | | || |||||||| |||||||| | | || || | || || Sbjct 1522281 ACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGCCTCAAACTCCT---CCGAGTGGAC 1522337 Query 213758 GTCC---AGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 |||| || || || || || || ||||||||| ||||||| || || | ||| Sbjct 1522338 GTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGAC 1522397 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || |||||| ||||| |||| ||| || ||| ||| ||||| | | | ||| Sbjct 1522398 ACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTC 1522457 Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| || ||| ||||| || || || ||||| |||| ||| |||||||| ||||| Sbjct 1522458 CTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTC 1522517 Query 213935 CATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | ||||||||||||||| || | || | ||||| |||||||| || | || Sbjct 1522518 AAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGT 1522577 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 || | | || || | ||| || | ||||| || | |||||||| || || || Sbjct 1522578 AGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAAT 1522637 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 ||||| || ||| | | |||| ||| ||| || || || ||||| |||||| Sbjct 1522638 GTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGA 1522697 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTT 214171 |||| ||||||| | | | || || ||| ||| | || ||| || | | | Sbjct 1522698 GATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGC 1522757 Query 214172 CAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCT 214231 | | |||||| ||| | |||||| ||| | |||| |||||| || || || Sbjct 1522758 GACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGA 1522817 Query 214232 GGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTC 214291 ||| ||| | | | | || | ||| |||| ||||| | ||| | |||| Sbjct 1522818 GGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTT 1522877 Query 214292 GTGCTTGTGGATCTGTAGAGCG-CAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349 || ||||| | || || ||| | ||| | |||||||||||| | ||| | | Sbjct 1522878 GTCGCCGTGGA--TACCGATCGACACGCGCATGATCATGTGCTGGGGACGCTC--GGCGA 1522933 Query 214350 CCTTTGGGGCCCT--TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||| | | | ||| ||||| |||||||| || |||||||| ||||||||| Sbjct 1522934 CCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTAG 1522989 >seq6 Length=1958011 Score = 241 bits (266), Expect = 2e-58 Identities = 373/528 (71%), Gaps = 11/528 (2%) Strand=Plus/Plus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| |||| | |||||| ||||||| ||| ||||||||||| Sbjct 63099 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 63158 Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978 | || ||| | | || ||| | | ||||| | || ||||| |||| | Sbjct 63159 CGAGTAGTACGTCT-TCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAA 63217 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | ||||||| | ||||||||| || || || ||||| | |||| |||| Sbjct 63218 TGTACTGGCACATGAGTCCGGCGTTCATGCCAATCAGCGAGACGGGGAGCGCCTCGGTGA 63277 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG- 48097 | ||||||| ||| |||| ||||| ||| | ||||| || | | || || | | Sbjct 63278 GGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAATCTTCTCGATGAGG---TCGGGGT 63334 Query 48098 --GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTT 48155 || | ||| |||||| | | | |||| |||||||||||| |||| | || | Sbjct 63335 GCGGGCGGCGGCGGAGGTGCGT---AAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCT 63391 Query 48156 CGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGA 48215 |||| || |||||| |||| |||||| |||||| ||||||| || | || |||| Sbjct 63392 CGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGA 63451 Query 48216 GCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGG 48275 ||||||| || | || || ||||| ||||||||||||||||| || || || ||||| Sbjct 63452 GCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAA 63511 Query 48276 TGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCT 48335 | || | ||| | || |||| |||| ||| ||||||||| ||||||||||| |||| Sbjct 63512 TCAGACGCTCAGCAAACGAAGACTTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCT 63571 Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 ||||||||||||| || || |||| ||||| |||||| | | ||| Sbjct 63572 TCTTCTTGATGCACGGAATGTTCTCAATGGCGTTGAAGAGGTACGTGC 63619 >seq4 Length=2551142 Score = 116 bits (128), Expect = 7e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| |||||||| |||||| ||| ||||| || ||||||| ||||||| Sbjct 1013372 TACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAA 1013431 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || |||||| ||| | || ||||||||||| || ||||| || ||||| Sbjct 1013432 AACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCC 1013491 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||||||||| || ||| ||||| Sbjct 1013492 GAGAAGAAGATGCCCTCGACGCACGCAAACGC 1013523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532392454400