Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1 298 1e-75
seq6 241 2e-58
seq4 116 7e-21
>seq1
Length=6947394
Score = 298 bits (330), Expect = 1e-75
Identities = 1121/1736 (65%), Gaps = 49/1736 (3%)
Strand=Plus/Plus
Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747
|| || | ||| || ||||| |||||| ||||| | | | ||| || || | |||
Sbjct 1521283 AGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCAGCAAGGTCA 1521342
Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807
|||| | |||| || | |||||| ||||||||| |||| | |||| ||| || |||
Sbjct 1521343 ATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTGTAGATGGCCTTGATGTCGTCGGGG 1521402
Query 212808 AAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTATGGTC-AGCTGCAGGCGCATGTCC 212864
| || || |||| ||| | || || || | | | | |||||| ||| |||
Sbjct 1521403 ATACCAGGAATGTGCTGGATGGAACCACCCGAAGCAATGACGAGCTGCTT---CATCTCC 1521459
Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTT--GA-CCAGGTGAGGGTTGACTATCTG 212920
|||| |||||| || | | ||| ||| || ||||| || ||| | |||
Sbjct 1521460 TCGTCCCAGAGACCAAGGTTGATGAGGTCACGAAGGAGCCAGG----GGCAGACGACCTG 1521515
Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980
|||||||||||| || || | | | ||| | | || ||||||||||||| || |||
Sbjct 1521516 GAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCGAAGCACTC 1521575
Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040
||| || |||||||| | || ||| |||||||| || || || ||||| |||
Sbjct 1521576 GTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCATAGGGGCAACGAGGAGCGAGTT 1521635
Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100
| || ||||||| | | || || ||||| |||||| ||| | | | ||
Sbjct 1521636 GCGGACACCGTGCTTGGCAATCTTCTCACGGAGCTCGTCCCAGTTCCAGAGGTCGGT-AG 1521694
Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160
| | || |||||| | ||| ||||| | |||| | | ||| ||
Sbjct 1521695 GAACGCG--------GTTCCAGAGGTCGAACTGAAGCTTGCCCTGCGAGATGGGCGAACC 1521746
Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220
|| ||| |||| ||||| |||| ||| |||| ||| || |||| || || |||||
Sbjct 1521747 CTCGTACGAGGGGTAGGTGCCAGCCTCGACAGCCATCTCACACGACGACTCGAGAGCAGC 1521806
Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280
|| ||||||||| || || |||| |||||||| || | || || ||||||
Sbjct 1521807 GTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGACGAGCAGCGGGCGAGTCGAAGGG 1521866
Query 213281 CATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339
||| | || || || || || || |||||||| |||| || | ||| | ||
Sbjct 1521867 CATGCGGAGAGCCATG-AAGGTGTCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGT 1521925
Query 213340 GTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399
| | || ||| || ||| | ||| | |||||| |||||| ||||| ||
Sbjct 1521926 GACGCATGTTCGAGTTGCGGGCCTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGT 1521985
Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC 213459
|||||| |||| | || ||||||| | | || | || | | | | || |
Sbjct 1521986 CGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGT 1522045
Query 213460 CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519
| | | ||||| |||| || ||||| ||| |||||||| ||||| ||||| |
Sbjct 1522046 TCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGT 1522105
Query 213520 -GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGG 213578
| ||| | |||||| |||||||| ||||| |||||| | |||||| ||||||
Sbjct 1522106 CGGGAGAA-GAGTACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGG 1522164
Query 213579 TTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638
| ||| ||||| ||||| |||||| | ||||||||||||||| ||||| || |||
Sbjct 1522165 TGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTC 1522224
Query 213639 TCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698
||| ||||| | | || || | |||||| | | ||||||| | || |
Sbjct 1522225 TCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCTTGA----TGGTCTTGCG 1522280
Query 213699 GCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCT 213757
| | | | | || |||||||| |||||||| | | || || | || ||
Sbjct 1522281 ACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGCCTCAAACTCCT---CCGAGTGGAC 1522337
Query 213758 GTCC---AGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814
|||| || || || || || || ||||||||| ||||||| || || | |||
Sbjct 1522338 GTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGAC 1522397
Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874
| || |||||| ||||| |||| ||| || ||| ||| ||||| | | | |||
Sbjct 1522398 ACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTC 1522457
Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934
||| || ||| ||||| || || || ||||| |||| ||| |||||||| |||||
Sbjct 1522458 CTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTC 1522517
Query 213935 CATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCAC 213991
| ||||||||||||||| || | || | ||||| |||||||| || | ||
Sbjct 1522518 AAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGT 1522577
Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051
|| | | || || | ||| || | ||||| || | |||||||| || || ||
Sbjct 1522578 AGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAAT 1522637
Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111
||||| || ||| | | |||| ||| ||| || || || ||||| ||||||
Sbjct 1522638 GTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGA 1522697
Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTT 214171
|||| ||||||| | | | || || ||| ||| | || ||| || | | |
Sbjct 1522698 GATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGC 1522757
Query 214172 CAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCT 214231
| | |||||| ||| | |||||| ||| | |||| |||||| || || ||
Sbjct 1522758 GACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGA 1522817
Query 214232 GGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTC 214291
||| ||| | | | | || | ||| |||| ||||| | ||| | ||||
Sbjct 1522818 GGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTT 1522877
Query 214292 GTGCTTGTGGATCTGTAGAGCG-CAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349
|| ||||| | || || ||| | ||| | |||||||||||| | ||| | |
Sbjct 1522878 GTCGCCGTGGA--TACCGATCGACACGCGCATGATCATGTGCTGGGGACGCTC--GGCGA 1522933
Query 214350 CCTTTGGGGCCCT--TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403
|||| | | | ||| ||||| |||||||| || |||||||| |||||||||
Sbjct 1522934 CCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTAG 1522989
>seq6
Length=1958011
Score = 241 bits (266), Expect = 2e-58
Identities = 373/528 (71%), Gaps = 11/528 (2%)
Strand=Plus/Plus
Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919
||| |||||||| | ||| |||| | |||||| ||||||| ||| |||||||||||
Sbjct 63099 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 63158
Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978
| || ||| | | || ||| | | ||||| | || ||||| |||| |
Sbjct 63159 CGAGTAGTACGTCT-TCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAA 63217
Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038
|||| | ||||||| | ||||||||| || || || ||||| | |||| ||||
Sbjct 63218 TGTACTGGCACATGAGTCCGGCGTTCATGCCAATCAGCGAGACGGGGAGCGCCTCGGTGA 63277
Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG- 48097
| ||||||| ||| |||| ||||| ||| | ||||| || | | || || | |
Sbjct 63278 GGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAATCTTCTCGATGAGG---TCGGGGT 63334
Query 48098 --GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTT 48155
|| | ||| |||||| | | | |||| |||||||||||| |||| | || |
Sbjct 63335 GCGGGCGGCGGCGGAGGTGCGT---AAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCT 63391
Query 48156 CGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGA 48215
|||| || |||||| |||| |||||| |||||| ||||||| || | || ||||
Sbjct 63392 CGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGA 63451
Query 48216 GCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGG 48275
||||||| || | || || ||||| ||||||||||||||||| || || || |||||
Sbjct 63452 GCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAA 63511
Query 48276 TGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCT 48335
| || | ||| | || |||| |||| ||| ||||||||| ||||||||||| ||||
Sbjct 63512 TCAGACGCTCAGCAAACGAAGACTTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCT 63571
Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383
||||||||||||| || || |||| ||||| |||||| | | |||
Sbjct 63572 TCTTCTTGATGCACGGAATGTTCTCAATGGCGTTGAAGAGGTACGTGC 63619
>seq4
Length=2551142
Score = 116 bits (128), Expect = 7e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
|| |||| ||| |||||||| |||||| ||| ||||| || ||||||| |||||||
Sbjct 1013372 TACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAA 1013431
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
|| || || |||||| ||| | || ||||||||||| || ||||| || |||||
Sbjct 1013432 AACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCC 1013491
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
||||||||||||||||| || ||| |||||
Sbjct 1013492 GAGAAGAAGATGCCCTCGACGCACGCAAACGC 1013523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532392454400
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