Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 306 7e-78
seq6 181 2e-40
seq4 125 1e-23
>seq1
Length=6947394
Score = 306 bits (338), Expect = 7e-78
Identities = 806/1221 (66%), Gaps = 41/1221 (3%)
Strand=Plus/Plus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
|| |||||||||||||||||||| |||||| |||||| || | || |||| ||
Sbjct 1521799 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAG-CTGACGAGCAGCGGGCGA 1521857
Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538
||||||||| || || | ||| |||||| || ||||| || |||| ||| |
Sbjct 1521858 GTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCCTGGACACCGAGACCAAC 1521917
Query 221539 GGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596
||| | ||| | | |||| || |||| || || || ||||| || ||||| |
Sbjct 1521918 GGGGCGGTGACGCATGTTCGAGTTGCGG--GCCTCGGGGACGGGGTAGTAGTTGCGCGAG 1521975
Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656
|| | | || ||||||| |||| ||| || | |||| ||||||| |
Sbjct 1521976 ATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTTG------ 1522029
Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716
|| ||| | || || || ||||| || || || | |||
Sbjct 1522030 ------AAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCA 1522083
Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776
||||| || ||||| |||||||| | |||| |||||||| || |||||||||
Sbjct 1522084 AGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAGAGGTTG 1522143
Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836
|||||||||| |||||||| | || || |||||||| ||||| ||||||||||||
Sbjct 1522144 GACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAG 1522203
Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG 221896
||||| ||||| || |||||||| ||| ||| | || || | |||||| | ||||
Sbjct 1522204 AGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCT-TCTG 1522262
Query 221897 -GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949
|| | | ||| | |||| | | | |||| ||| || ||| ||||
Sbjct 1522263 AGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTC-------GTAGAGAG 1522315
Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009
| | |||||| || || | || || || || ||| ||| || ||||| ||
Sbjct 1522316 CCT--CAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAG 1522373
Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069
|||||| | | | | ||| | || |||||||||||| |||||||| || || |
Sbjct 1522374 GGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTA 1522433
Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129
||||| || | | || ||||||| ||||| ||| || | || || | || ||
Sbjct 1522434 GAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTC 1522493
Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189
|| | ||| |||||||| ||||| || |||| ||| | || ||||| |||||||||||
Sbjct 1522494 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCC 1522553
Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249
||||| || || | | ||||| | | || || | || || | |||||
Sbjct 1522554 TCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTT 1522613
Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309
|| ||||||||| || |||||||| ||| ||| | | ||| ||| |
Sbjct 1522614 CGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTG-TGGATGTGGA 1522672
Query 222310 G-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
| |||||||| ||||| || |||||| ||||||| ||||||| ||||| ||| |
Sbjct 1522673 GACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATAC 1522732
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428
| || || ||||||||||| | | | || || || ||||||||||| | |||| ||
Sbjct 1522733 CGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGG 1522792
Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488
|| ||||| || || || || |||||| || ||||||| | ||||| || | ||
Sbjct 1522793 TACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGT 1522852
Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548
| ||||| | ||| || | |||||||| ||||| || || | | |||| ||
Sbjct 1522853 AAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCA 1522912
Query 222549 TGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAG 222606
||| |||||| | ||| | |||| | | | || ||| |||||||| || ||
Sbjct 1522913 TGTGCTGGGGACGCTCGGC--GACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAG 1522970
Query 222607 AGTCTTGAACCCAAAGTAGTT 222627
|||||||| |||||||||||
Sbjct 1522971 GGTCTTGAAGCCAAAGTAGTT 1522991
>seq6
Length=1958011
Score = 181 bits (200), Expect = 2e-40
Identities = 343/508 (68%), Gaps = 7/508 (1%)
Strand=Plus/Minus
Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854
||||| ||| |||| || ||||||||| |||||| ||||| || ||||||
Sbjct 63602 GCCATTGAGAACATTCCGTGCATCAAGAAGAAGGCCGACTGGGCGCTGCGCTGGATCTCG 63543
Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914
| ||| || |||||| ||||| ||| | || ||||| || || |||||||||||
Sbjct 63542 GACGAGAAGTCTTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTC 63483
Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974
||| || |||||||| ||||||||||||||||| || || ||||||||| ||
Sbjct 63482 TTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTC 63423
Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034
||| || ||||||||||| | |||||||||||||||| || ||||||||||||
Sbjct 63422 ACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTG 63363
Query 26035 CTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAA 26094
|| | ||| ||| | | || | || | || | || | | || |||||
Sbjct 63362 CTGTTTACG---CACCTCCGCCGCCGCCCGCACCCCGACCTCATCGAGAAGATTATCAAG 63306
Query 26095 GAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGC 26154
||||| || |||| ||| ||||||| | | |||
Sbjct 63305 GAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGC 63246
Query 26155 ATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCC 26212
|||||| | |||||||| |||| |||||||||| ||| ||||||| |||||| || |||
Sbjct 63245 ATGAACGCCGGACTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCC 63186
Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272
| | || | |||| ||| || | ||||| |||||||||||||| | || |
Sbjct 63185 CTCGGCAACGAG-AAGAC-GTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCT 63128
Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGA 26300
|| | | || ||| |||||||||| ||
Sbjct 63127 CGCTCCAGGGCAAGGCCAACTTCTTCGA 63100
>seq4
Length=2551142
Score = 125 bits (138), Expect = 1e-23
Identities = 127/163 (78%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 25879 CGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937
|| ||| | || ||||| ||| || ||||||||||| ||| || ||||||||||||||
Sbjct 1013532 CGCCTGATTGCGTTTGCGTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCAT 1013474
Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997
||||||||||||| || ||| ||||| ||| ||| ||||||||||||||||||
Sbjct 1013473 CTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTC 1013414
Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
| |||||||| | |||| || ||||| |||||||| |||
Sbjct 1013413 GCGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGTAC 1013371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844393630400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |