Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 306 7e-78 seq6 181 2e-40 seq4 125 1e-23 >seq1 Length=6947394 Score = 306 bits (338), Expect = 7e-78 Identities = 806/1221 (66%), Gaps = 41/1221 (3%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 || |||||||||||||||||||| |||||| |||||| || | || |||| || Sbjct 1521799 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAG-CTGACGAGCAGCGGGCGA 1521857 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||||| || || | ||| |||||| || ||||| || |||| ||| | Sbjct 1521858 GTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCCTGGACACCGAGACCAAC 1521917 Query 221539 GGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||| | ||| | | |||| || |||| || || || ||||| || ||||| | Sbjct 1521918 GGGGCGGTGACGCATGTTCGAGTTGCGG--GCCTCGGGGACGGGGTAGTAGTTGCGCGAG 1521975 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | | || ||||||| |||| ||| || | |||| ||||||| | Sbjct 1521976 ATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTTG------ 1522029 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || ||| | || || || ||||| || || || | ||| Sbjct 1522030 ------AAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCA 1522083 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 ||||| || ||||| |||||||| | |||| |||||||| || ||||||||| Sbjct 1522084 AGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAGAGGTTG 1522143 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||| |||||||| | || || |||||||| ||||| |||||||||||| Sbjct 1522144 GACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAG 1522203 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG 221896 ||||| ||||| || |||||||| ||| ||| | || || | |||||| | |||| Sbjct 1522204 AGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCT-TCTG 1522262 Query 221897 -GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 || | | ||| | |||| | | | |||| ||| || ||| |||| Sbjct 1522263 AGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTC-------GTAGAGAG 1522315 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | |||||| || || | || || || || ||| ||| || ||||| || Sbjct 1522316 CCT--CAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAG 1522373 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||||| | | | | ||| | || |||||||||||| |||||||| || || | Sbjct 1522374 GGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTA 1522433 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||||| || | | || ||||||| ||||| ||| || | || || | || || Sbjct 1522434 GAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTC 1522493 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | ||| |||||||| ||||| || |||| ||| | || ||||| ||||||||||| Sbjct 1522494 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCC 1522553 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || || | | ||||| | | || || | || || | ||||| Sbjct 1522554 TCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTT 1522613 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309 || ||||||||| || |||||||| ||| ||| | | ||| ||| | Sbjct 1522614 CGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTG-TGGATGTGGA 1522672 Query 222310 G-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 | |||||||| ||||| || |||||| ||||||| ||||||| ||||| ||| | Sbjct 1522673 GACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATAC 1522732 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || ||||||||||| | | | || || || ||||||||||| | |||| || Sbjct 1522733 CGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGG 1522792 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || ||||| || || || || |||||| || ||||||| | ||||| || | || Sbjct 1522793 TACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGT 1522852 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | ||| || | |||||||| ||||| || || | | |||| || Sbjct 1522853 AAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCA 1522912 Query 222549 TGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAG 222606 ||| |||||| | ||| | |||| | | | || ||| |||||||| || || Sbjct 1522913 TGTGCTGGGGACGCTCGGC--GACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAG 1522970 Query 222607 AGTCTTGAACCCAAAGTAGTT 222627 |||||||| ||||||||||| Sbjct 1522971 GGTCTTGAAGCCAAAGTAGTT 1522991 >seq6 Length=1958011 Score = 181 bits (200), Expect = 2e-40 Identities = 343/508 (68%), Gaps = 7/508 (1%) Strand=Plus/Minus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| ||| |||| || ||||||||| |||||| ||||| || |||||| Sbjct 63602 GCCATTGAGAACATTCCGTGCATCAAGAAGAAGGCCGACTGGGCGCTGCGCTGGATCTCG 63543 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | ||| || |||||| ||||| ||| | || ||||| || || ||||||||||| Sbjct 63542 GACGAGAAGTCTTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTC 63483 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| ||||||||||||||||| || || ||||||||| || Sbjct 63482 TTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTC 63423 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| || ||||||||||| | |||||||||||||||| || |||||||||||| Sbjct 63422 ACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTG 63363 Query 26035 CTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAA 26094 || | ||| ||| | | || | || | || | || | | || ||||| Sbjct 63362 CTGTTTACG---CACCTCCGCCGCCGCCCGCACCCCGACCTCATCGAGAAGATTATCAAG 63306 Query 26095 GAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGC 26154 ||||| || |||| ||| ||||||| | | ||| Sbjct 63305 GAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGC 63246 Query 26155 ATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCC 26212 |||||| | |||||||| |||| |||||||||| ||| ||||||| |||||| || ||| Sbjct 63245 ATGAACGCCGGACTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCC 63186 Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272 | | || | |||| ||| || | ||||| |||||||||||||| | || | Sbjct 63185 CTCGGCAACGAG-AAGAC-GTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCT 63128 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGA 26300 || | | || ||| |||||||||| || Sbjct 63127 CGCTCCAGGGCAAGGCCAACTTCTTCGA 63100 >seq4 Length=2551142 Score = 125 bits (138), Expect = 1e-23 Identities = 127/163 (78%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 25879 CGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937 || ||| | || ||||| ||| || ||||||||||| ||| || |||||||||||||| Sbjct 1013532 CGCCTGATTGCGTTTGCGTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCAT 1013474 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 ||||||||||||| || ||| ||||| ||| ||| |||||||||||||||||| Sbjct 1013473 CTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTC 1013414 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||||||| | |||| || ||||| |||||||| ||| Sbjct 1013413 GCGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGTAC 1013371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844393630400