Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 199 5e-46 seq6 100 3e-16 seq5 100 3e-16 seq4 84.2 3e-11 >seq1 Length=6947394 Score = 199 bits (220), Expect = 5e-46 Identities = 718/1113 (65%), Gaps = 29/1113 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| ||||||||| || || | || |||| |||| || Sbjct 1522988 TACTTTGGCTTCAAGACCCTTGAGCGCTCGTACCTCCTCCGCATCGACGGCAAGGTCGCC 1522929 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || || ||| ||||| ||||||| || | ||||| |||||||| || ||||||| Sbjct 1522928 GAGCGTCCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGAC 1522869 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 ||| | ||||| ||| || ||||| | | |||| ||||| | || ||| Sbjct 1522868 AAGGTCATTGAGACTTACAACCTCATGTCGGAGCGCTACTTCACCCACGCCTCGCCTACC 1522809 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 |||||||| |||||||| || | || |||||||| ||||||||| |||||| ||| Sbjct 1522808 CTCTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAG 1522749 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 |||||||| ||| |||||||||| | || || | | || || || ||||| ||| Sbjct 1522748 GAGGACTCGATCGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACT 1522689 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || ||||| || | |||||||| | | | ||||| || ||| || Sbjct 1522688 GCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCCGGT 1522629 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || ||| | || | |||||| | || ||||| || | || |||| || || || Sbjct 1522628 ACCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCTCGT 1522569 Query 75566 TATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || || | | || | ||| ||| || || | || ||||| | || || || Sbjct 1522568 TACGTCGA-CCAGGGAGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTG 1522510 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| ||||| || | || ||||| || | || ||||| || | || |||| ||| Sbjct 1522509 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 1522450 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | || ||||| | |||| ||||| || ||||| ||||||||||| || |||| Sbjct 1522449 TGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 1522390 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTG 75799 | ||| | ||| | || | || || | | || || |||||||| |||| | | Sbjct 1522389 CGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTC 1522330 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAGAGCCAAT 75853 | ||||||||||| || |||||| ||||| || |||| ||||| | ||| Sbjct 1522329 G--GAGGAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCGAGGGCAAGGGTCG---CAA- 1522276 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | || | | || | | ||| | || || | | ||||| |||||||| Sbjct 1522275 --GACCAT-CAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGG 1522219 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || | ||||| |||||||| || ||| ||| ||||| || | |||| Sbjct 1522218 TGGCCCCTTCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGG 1522159 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || |||||| || || || ||||| || || | |||||| | | || ||| Sbjct 1522158 TACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGT 1522099 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 || || ||||| | || || ||||| || || | |||| | |||| ||| Sbjct 1522098 TGCCGTCTGCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGTCGACTTTGAGAACAACAC 1522039 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || ||||| ||| | || ||||| || || || | || Sbjct 1522038 CTACGACTTCAAGAAGCTCCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACTGTGT 1521979 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 ||| | || | || ||||| ||| || || || || || ||||| ||| | Sbjct 1521978 CATCTCGCGCAACTACTACCCCGTCCCCGAG---GCCCGCAACTCGAACATGCGTCACCG 1521922 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 || ||||| | ||||| || ||||| || || Sbjct 1521921 CCCCGTTGGTCTCGGTGTCCAGGGTCTTGCCGA 1521889 >seq6 Length=1958011 Score = 100 bits (110), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 65059 AAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118 |||||| || || || ||||| || |||||||||| || ||||| ||||||||| Sbjct 63536 AAGTCT---TCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTC 63480 Query 65119 TCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGC 65178 || || || || | | || | ||| | |||||||| || |||||||| || || | Sbjct 63479 TCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACC 63420 Query 65179 TTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||| || || || ||||| || || |||||||||||| || |||||| Sbjct 63419 TTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCC 63369 >seq5 Length=2075171 Score = 100 bits (110), Expect = 3e-16 Identities = 223/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 175183 CGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGAT 175242 |||||| | || || | || || |||| ||||| || || || ||| |||| | Sbjct 652640 CGCTTCCGCGACGTCGCTGGCATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAAG 652699 Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCC 175300 || |||||| | || | || || |||| || ||||||||||| || |||||| Sbjct 652700 TTCCTCAAGGAGCCGGCGAAGTACGA--GAAGCTCGGCGCCAAGATCCCGCGCGGCGCCA 652757 Query 175301 TTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAAT 175360 | ||| |||| ||| ||||| || ||||| || |||||| || | ||| ||||| Sbjct 652758 TCCTCTCGGGCCCGCCCGGTACCGGTAAGACGCTGCTCGCCAAGGCGACCGCCGGTGAGG 652817 Query 175361 CAAATGTCCCATTCAT-CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || || || ||| | | || ||| | | | |||||||||||||| || ||||| Sbjct 652818 CCAAGGTGCCCTTCCTGTCCGT-CTCGGGTTCCGAGTTTGTGGAGATGTTCGTCGGTGTC 652876 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||| || | || ||||| || || | | |||| | | || || ||||| || Sbjct 652877 GGTCCCTCGCGTGTGCGCGACCTGTTCGCGACCGCCAGGAAGAACGCGCCGTGTATCATC 652936 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAG 175509 ||| | ||||||||||| || | |||||| Sbjct 652937 TTCGTGGATGAGATTGACGCCATCGGCAAG 652966 >seq4 Length=2551142 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTAT 65138 ||||| ||||||||||||| || ||||| ||||||||||| || || || ||| || || Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCAT 1013474 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| | |||||||| || ||||||| ||||| || || || || || || || Sbjct 1013473 CTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTC 1013414 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || ||||| | ||| || ||||| Sbjct 1013413 GCGCGACGAGGGCATGCACACCGACTTTGC 1013384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569339000800