Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 199 5e-46
seq6 100 3e-16
seq5 100 3e-16
seq4 84.2 3e-11
>seq1
Length=6947394
Score = 199 bits (220), Expect = 5e-46
Identities = 718/1113 (65%), Gaps = 29/1113 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205
|||||||| |||| ||||||||| || || | || |||| |||| ||
Sbjct 1522988 TACTTTGGCTTCAAGACCCTTGAGCGCTCGTACCTCCTCCGCATCGACGGCAAGGTCGCC 1522929
Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265
|| || ||| ||||| ||||||| || | ||||| |||||||| || |||||||
Sbjct 1522928 GAGCGTCCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGAC 1522869
Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325
||| | ||||| ||| || ||||| | | |||| ||||| | || |||
Sbjct 1522868 AAGGTCATTGAGACTTACAACCTCATGTCGGAGCGCTACTTCACCCACGCCTCGCCTACC 1522809
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|||||||| |||||||| || | || |||||||| ||||||||| |||||| |||
Sbjct 1522808 CTCTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAG 1522749
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|||||||| ||| |||||||||| | || || | | || || || ||||| |||
Sbjct 1522748 GAGGACTCGATCGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACT 1522689
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
|| || ||||| || | |||||||| | | | ||||| || ||| ||
Sbjct 1522688 GCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCCGGT 1522629
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| || ||| | || | |||||| | || ||||| || | || |||| || || ||
Sbjct 1522628 ACCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCTCGT 1522569
Query 75566 TATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621
|| || | | || | ||| ||| || || | || ||||| | || || ||
Sbjct 1522568 TACGTCGA-CCAGGGAGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTG 1522510
Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681
||| ||||| || | || ||||| || | || ||||| || | || |||| |||
Sbjct 1522509 GCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 1522450
Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741
| | || ||||| | |||| ||||| || ||||| ||||||||||| || ||||
Sbjct 1522449 TGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGC 1522390
Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTG 75799
| ||| | ||| | || | || || | | || || |||||||| |||| | |
Sbjct 1522389 CGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTC 1522330
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAGAGCCAAT 75853
| ||||||||||| || |||||| ||||| || |||| ||||| | |||
Sbjct 1522329 G--GAGGAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCGAGGGCAAGGGTCG---CAA- 1522276
Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912
||| | | || | | || | | ||| | || || | | ||||| ||||||||
Sbjct 1522275 --GACCAT-CAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGG 1522219
Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972
|| | ||||| |||||||| || ||| ||| ||||| || | ||||
Sbjct 1522218 TGGCCCCTTCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGG 1522159
Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032
|| |||||| || || || ||||| || || | |||||| | | || |||
Sbjct 1522158 TACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGT 1522099
Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092
|| || ||||| | || || ||||| || || | |||| | |||| |||
Sbjct 1522098 TGCCGTCTGCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGTCGACTTTGAGAACAACAC 1522039
Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152
| || | | || || || || ||||| ||| | || ||||| || || || | ||
Sbjct 1522038 CTACGACTTCAAGAAGCTCCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACTGTGT 1521979
Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209
||| | || | || ||||| ||| || || || || || ||||| ||| |
Sbjct 1521978 CATCTCGCGCAACTACTACCCCGTCCCCGAG---GCCCGCAACTCGAACATGCGTCACCG 1521922
Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242
|| ||||| | ||||| || ||||| || ||
Sbjct 1521921 CCCCGTTGGTCTCGGTGTCCAGGGTCTTGCCGA 1521889
>seq6
Length=1958011
Score = 100 bits (110), Expect = 3e-16
Identities = 125/171 (73%), Gaps = 3/171 (2%)
Strand=Plus/Minus
Query 65059 AAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118
|||||| || || || ||||| || |||||||||| || ||||| |||||||||
Sbjct 63536 AAGTCT---TCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTC 63480
Query 65119 TCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGC 65178
|| || || || | | || | ||| | |||||||| || |||||||| || || |
Sbjct 63479 TCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACC 63420
Query 65179 TTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
||||| || || || ||||| || || |||||||||||| || ||||||
Sbjct 63419 TTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCC 63369
>seq5
Length=2075171
Score = 100 bits (110), Expect = 3e-16
Identities = 223/330 (68%), Gaps = 6/330 (2%)
Strand=Plus/Plus
Query 175183 CGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGAT 175242
|||||| | || || | || || |||| ||||| || || || ||| |||| |
Sbjct 652640 CGCTTCCGCGACGTCGCTGGCATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAAG 652699
Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCC 175300
|| |||||| | || | || || |||| || ||||||||||| || ||||||
Sbjct 652700 TTCCTCAAGGAGCCGGCGAAGTACGA--GAAGCTCGGCGCCAAGATCCCGCGCGGCGCCA 652757
Query 175301 TTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAAT 175360
| ||| |||| ||| ||||| || ||||| || |||||| || | ||| |||||
Sbjct 652758 TCCTCTCGGGCCCGCCCGGTACCGGTAAGACGCTGCTCGCCAAGGCGACCGCCGGTGAGG 652817
Query 175361 CAAATGTCCCATTCAT-CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419
| || || || ||| | | || ||| | | | |||||||||||||| || |||||
Sbjct 652818 CCAAGGTGCCCTTCCTGTCCGT-CTCGGGTTCCGAGTTTGTGGAGATGTTCGTCGGTGTC 652876
Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479
||| || | || ||||| || || | | |||| | | || || ||||| ||
Sbjct 652877 GGTCCCTCGCGTGTGCGCGACCTGTTCGCGACCGCCAGGAAGAACGCGCCGTGTATCATC 652936
Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAG 175509
||| | ||||||||||| || | ||||||
Sbjct 652937 TTCGTGGATGAGATTGACGCCATCGGCAAG 652966
>seq4
Length=2551142
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTAT 65138
||||| ||||||||||||| || ||||| ||||||||||| || || || ||| || ||
Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCAT 1013474
Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198
| ||| | |||||||| || ||||||| ||||| || || || || || || ||
Sbjct 1013473 CTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTC 1013414
Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| || ||||| | ||| || |||||
Sbjct 1013413 GCGCGACGAGGGCATGCACACCGACTTTGC 1013384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569339000800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |