Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7 340 2e-88 seq1 178 2e-39 seq6 170 3e-37 seq9 123 3e-23 >seq7 Length=1486079 Score = 340 bits (376), Expect = 2e-88 Identities = 828/1251 (66%), Gaps = 5/1251 (0%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || ||||| ||||| | || |||||||||||||| || || ||| | | Sbjct 875158 CCCGAGGAGATCTCGTCGATGGTCCTTATCAAGATGAAGGAGACCGCCGAGGCTTACCTT 875217 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || || | || ||||| || || || || ||||||| || || || || Sbjct 875218 GGCGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCCCAGCGT 875277 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || |||||||| | | | ||||| || || || || | || ||||| || Sbjct 875278 CAGGCCACCAAGGACGCCGGTACCATTGCCGGCCTCGACGTCCTCCGTATCATCAACGAG 875337 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| |||||||| | || | || || || || Sbjct 875338 CCCACCGCCGCCGCCATCGCCTACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAACGTT 875397 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | ||||| || |||||||| || || || |||||||| || || | ||||| | || Sbjct 875398 CTCATCTTCGACCTCGGTGGAGGAACCTTCGATGTCTCGCTCCTTACCATTGAGGAGGGC 875457 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || ||||| || |||||||| || ||||| || ||||| |||||||| || ||||| Sbjct 875458 ATCTTCGAGGTCAAGGCTACCGCCGGTGACACCCATCTTGGTGGTGAGGACTTCGACAAC 875517 Query 195992 CGTCTTCTCCGTCATTT-GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGG 196050 ||||| || || || ||| | |||||| || ||||| ||||| || | || || Sbjct 875518 CGTCTCGTCAACCACTTCGTCC-AGGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGGG 875576 Query 196051 AAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTC 196110 || || | || || || || || | || || || || ||||||||||| || ||||| Sbjct 875577 CAACGCTCGTGCCCTCCGCCGTCTCCGCACCGCTTGCGAGCGTGCCAAACGCACCCTCTC 875636 Query 196111 TTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATAC 196170 ||| | || || || | | |||||||| ||| | || ||||| || |||||||| || Sbjct 875637 GTCTGCCGCCCAGACCTCGATCGAGATTGACTCGCTCTTCGACGGCATCGACTTCTACAC 875696 Query 196171 AACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGA 196230 | || |||||||| ||||| || ||| | | || | || | | ||||| Sbjct 875697 CTCGATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGA 875756 Query 196231 ACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGT 196290 || || || | || || || ||| | ||||| || ||||| ||| | || || || Sbjct 875757 GCCCGTCGAGAAGGTCCTCCGCGACTCGAAGATTGACAAGTCGTCGGTCAACGAGATCGT 875816 Query 196291 CCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAA 196350 |||||| || || || || ||||| || ||||| || || | | || | | ||| Sbjct 875817 CCTTGTCGGTGGTTCCACTCGTATCCCCAAGATCCAGAAGCTCGTCTCGGACATGTTCTC 875876 Query 196351 TAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGT 196410 | || ||| |||||||||| || || || || || || ||||| ||||| Sbjct 875877 TGGCCGTGAGCCCAACCGCTCGATCAACCCCGACGAGGCCGTCGCCTACGGTGCCGCCGT 875936 Query 196411 TCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGA 196470 |||||| | || ||| |||| | | | ||| || || || || || || Sbjct 875937 CCAGGCTTCGATCCTCAACGGTGAGACCTCGGAGGCCACCCAGGACCTCCTCCTCCTCGA 875996 Query 196471 TGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGA 196530 ||||| || | ||| ||||| | || || || || ||| | ||||| | || | Sbjct 875997 CGTTGCCCCTCTCTCCATGGGTATCGAGACCGCCGGCGGTATCATGACCCCCCTCATCAA 876056 Query 196531 TAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA 196590 | ||||| || | || || |||||| | |||| || || || || || || || Sbjct 876057 GCGCAACACCACCGTCCCCACCAAGAAGTCGGAGATCTTCTCGACCTACTCGGACAACCA 876116 Query 196591 ACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCT 196650 || ||||| | || || || || || || || || || | ||||| | | || Sbjct 876117 GCCCGGTGTCCTCATCCAGGTCTACGAGGGCGAGCGTGCCAAGACCAAGGACTGCAACCT 876176 Query 196651 ACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAA 196710 || || | ||||| | |||| || || | || ||| | ||||| || ||||| | Sbjct 876177 CCTCGGCAAGTTCGAGCTCTCGGGCATCCCCCCGGCTCCCCGCGGTGTCCCCCAGATCGA 876236 Query 196711 TGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTC 196770 || | ||||| | ||||| || || || || ||||| | || ||||||| | | Sbjct 876237 GGTCTCGTTCGACGTCGACGCCAACGGTATCCTCAACGTTAACGCCTCGGACAAGACCAC 876296 Query 196771 TGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 ||||| || |||| || ||||| |||||||| || || || |||||||| | Sbjct 876297 CGGCAAGTCGTCGCAGATCACCATCACCAACGACAAGGGCCGTCTCTCCAAGGAGGAGGT 876356 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTA---CAGGGAAGAAGACGAGGT 196878 || || ||||| || || || ||||| || ||| || | |||||| Sbjct 876357 CGAGCGCATGGTCGCCGAGGCCGAGAAGTACGCCAAGGAGGACGCCGAGGT 876407 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || || || || ||||| || ||||| ||||| | || ||||| || || || || ||| Sbjct 874779 GGAATTGACTTGGGAACGACGTACTCGTGTGTCGCCGTCTGGCAGAACGACCGCGTCGAG 874838 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 |||||| | || ||||| || ||||| || || || ||||||||||| || || || Sbjct 874839 ATTATCGCCAACGACCAGGGTAACCGCACTACCCCCTCGTACGTTGCGTTCACCGACTCG 874898 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || |||||| | || |||||||| || || ||| || |||||||| ||| || ||| Sbjct 874899 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCTACAACACCGTC 874958 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 || ||||| |||||||| |||||||||||||| Sbjct 874959 TTCGACGCCAAGCGTCTCATTGGTCGCAAGTT 874990 >seq1 Length=6947394 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 6690915 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 6690974 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| |||||||| || || ||||| ||||| || ||||| ||| Sbjct 6690975 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6691034 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 6691035 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6691094 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || |||||||| || | || || |||||| Sbjct 6691095 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGGT 6691142 Score = 104 bits (114), Expect = 3e-17 Identities = 289/438 (66%), Gaps = 13/438 (3%) Strand=Plus/Minus Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTC 78109 ||||| | ||||| | || || || ||||| ||| || |||||||| || || ||| Sbjct 1522823 CACGCCTCGCCTACCCTCTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTC 1522764 Query 78110 CTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGA-GTGTGC 78168 || | || | ||||||||||| || | ||||| |||| || |||| ||| || || Sbjct 1522763 CTTGTCGCCATGAAGGAGGACTCGATCGACGGTATCTACGACACCCTCA-AGACCTGCGC 1522705 Query 78169 TCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAA 78228 ||||| || ||| || || ||||| ||||| || || ||| | | ||||| || Sbjct 1522704 CCAGATCTCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGG 1522645 Query 78229 GTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATT 78288 || ||| || || || ||| | || | || ||| | || ||||| | | || Sbjct 1522644 TTCGTACATTGCCGGTACCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATA 1522585 Query 78289 CAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCGC 78342 | | ||||| || || || ||| |||| ||| | | ||| || | || || Sbjct 1522584 CGACGCTACTGCTCGTTACGTCGACCA---GGGAGGCAACAAGCGCCCCGGTGCCTTTGC 1522528 Query 78343 TATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCA 78402 || |||||||| |||||||||||||| || | || || | || || || ||||| Sbjct 1522527 CATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCA 1522468 Query 78403 GGGTGACGAGGAAGCTCGATGC-AGGGATTTATTCACTGCTATGTGGATTCCGGATCTTT 78461 || | ||||| | ||| ||| | || | ||| || | ||||| || || || | Sbjct 1522467 CGGCAAGGAGGAGGTTCG-TGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCT 1522409 Query 78462 TTATGAAGAGAGTTGAGG 78479 | |||||| | || |||| Sbjct 1522408 TCATGAAGCGTGTCGAGG 1522391 >seq6 Length=1958011 Score = 170 bits (188), Expect = 3e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| || || || || || |||||||| |||||||| Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||| || || ||||| || || || ||||| ||| Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41548 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || || || || || ||| | || |||||| Sbjct 41547 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 41488 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| ||||| ||||||||||| Sbjct 41487 ATCCAGAAGGAGTCGACTCTCCACCTTGTTCT 41456 Score = 161 bits (178), Expect = 1e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || || | || || || || ||||| |||||||||||||||| Sbjct 41897 GTATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGT 41838 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| | || |||||| || || ||||| || || || ||||| | Sbjct 41837 CGGACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACC 41778 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || ||||| || || || ||||| || ||||| || || ||| | || |||| Sbjct 41777 AGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACA 41718 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || | || |||||||| ||||| ||||| || || Sbjct 41717 ACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 41684 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || |||||||||||||| ||||| || ||||| || || ||| |||| Sbjct 42331 CCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAA 42272 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 ||||||| || || ||||| |||||||| ||||| ||||| || || || || || || Sbjct 42271 GTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 42212 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || |||||||| | || |||||| | || |||||||| || || Sbjct 42211 CAAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT 42152 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || || | || || || ||| Sbjct 42151 TCACCTCGTCCTTCGTCTCCGCGGAGGT 42124 >seq9 Length=1289175 Score = 123 bits (136), Expect = 3e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || || || || |||||||||||||| |||||||| ||||| ||||| Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| || ||||| || || ||||| ||||| || || || ||||| || || || Sbjct 761657 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 761716 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 || || || || ||||| || || || || ||||| | || |||| Sbjct 761717 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 761762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862112185200