Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 4e-14 seq9 87.8 5e-12 seq6 87.8 5e-12 >seq1 Length=6947394 Score = 95.1 bits (104), Expect = 4e-14 Identities = 189/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| ||||| ||||| | |||||||| || ||||| || | || || || || Sbjct 1876979 GTCCTCCATGGCCTTGACCAGTCGACGCTGGATGTAACCTGTCTCGGCGGTCTTGACGGC 1877038 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-A 302689 || || || ||||| ||||||| ||||| || |||||||| | ||||| || ||| | Sbjct 1877039 AGTGTCGATAAGACCCTCACGACCTCCCATGGCGTGGAAGAAGAACTCTTGGGG-CGTGA 1877097 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | | | ||| | || || || |||||||||||||| | |||| ||||| Sbjct 1877098 GACCGCGCAAGTACGAGTTTTCGACAAAGCCACGCGCCTCGGGTCCGTAGTCGTCCTTGG 1877157 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 |||| || || || | || | ||| | || ||||||||||| || || ||| Sbjct 1877158 CGTAGTGGGGGAGCGTGCGGTGGCGGAAACCGAAGGGAATACGCTTTCCTTCGACAATCT 1877217 Query 302810 GCTGTCCCA-GGCACGAAATCATCTGCGAAATATT 302843 |||| || | | ||| | | ||| |||||||| || Sbjct 1877218 GCTGGCCGACGACACCAGA-CATTTGCGAAATGTT 1877251 Score = 84.2 bits (92), Expect = 6e-11 Identities = 357/560 (64%), Gaps = 7/560 (1%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | |||||| ||||| || || || | ||| || | || | || || Sbjct 1522455 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGG 1522514 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| || || || ||||| ||| | |||| || ||||| || || || ||||| Sbjct 1522515 CTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGC 1522574 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| | | | ||| ||||| || | |||||| || || || ||||| ||| Sbjct 1522575 AGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGC 1522634 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | |||||| | || | || || || || || || ||||| || | || Sbjct 1522635 AATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTT 1522694 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || ||||| ||| | || | | | ||||| || || || || || | ||| Sbjct 1522695 GGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCAT 1522754 Query 156266 TGATAGTAGATAGCACGA--ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 | | || ||||||| || | | | ||| | || || ||||||||||| || ||| Sbjct 1522755 GGCGACAAGGAAGCACGACGACATC-TGGGGGTTGGGG-GTACCAGCGTTGAAGAGGGTA 1522812 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || | || || | || || | ||||| | ||| ||||| | | ||| ||| Sbjct 1522813 GGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCA 1522872 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | || ||||| |||| ||| || || | ||| ||| ||||| |||||||| | Sbjct 1522873 ATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCATGTGCTGGGGACGCTCGGCG 1522932 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | | || || || || || ||||| | ||| || || || || || || || || | | Sbjct 1522933 ACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTAGTTA 1522992 Query 156504 AACAGAAAATCACGGTTGTA 156523 | ||| || |||| ||| Sbjct 1522993 TAGCTAAAGTCGCGGTCGTA 1523012 >seq9 Length=1289175 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 60143 GTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGT 60202 ||||||||||| | | || || ||||| |||||| | || || || || || Sbjct 1226793 GTGAAAATATAACGAGGGCTGGCCGCATCCTTTCCACCCTGCATGCGAGTACCGAACTGA 1226734 Query 60203 CCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACA 60262 ||||| |||| || || || |||||||| ||| || | || || |||||||||||| Sbjct 1226733 CCGTTGGGCTCGAGAAGGTTGATGTTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACA 1226674 Query 60263 ATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCA 60322 || | | ||||||||||| ||||| || ||| | | | || ||||| || ||| Sbjct 1226673 ATCGTGGACATCAAACTGGCTTCGCCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCA 1226614 Query 60323 CTGAATTGTGCGACTTTAATTTC 60345 | || || ||||| || ||||| Sbjct 1226613 CCGAGCTGGGCGACCTTGATTTC 1226591 >seq6 Length=1958011 Score = 87.8 bits (96), Expect = 5e-12 Identities = 170/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 133415 CTATTCAACGCCATTAGCGAA-TTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAA 133473 || |||||||||||| | ||| |||| || || || ||||| | |||||||| | Sbjct 63611 CTCTTCAACGCCATT-GAGAACATTCCGTGCATCAAGAAGAAGGCCGACTGGGCGCTGCG 63553 Query 133474 ATGGATCCAGGAC---AAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||| |||| ||| | || |||||| ||||| |||| ||||| | || Sbjct 63552 CTGGATCTCGGACGAGAAGTCTTCG---TTTGCTGAGCGTCTGATTGCGTTTGCCGCCGT 63496 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 |||||||| || ||| || |||| ||| || || ||||| || ||||| || | Sbjct 63495 CGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCT 63436 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || || || || ||||| || ||||| | ||||||| || |||||||| Sbjct 63435 CATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGA 63376 Query 133651 ATTTGCC 133657 |||||| Sbjct 63375 CTTTGCC 63369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816939981795