Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 7e-16
>seq6
Length=1958011
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || |||||||| |||||||| ||||| |||| || | ||
Sbjct 41465 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGC 41524
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT- 33665
|| ||||| ||||||| |||||||| || | || | ||| || ||||| || ||
Sbjct 41525 TTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 41584
Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724
|| || ||| | ||| | |||||| || || || || | ||| ||||| || || |
Sbjct 41585 CTCTT--AACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGG 41642
Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749
| | ||| || ||||||||||||||
Sbjct 41643 TAAGCGTCTTCACAAAGATCTGCAT 41667
Score = 84.2 bits (92), Expect = 1e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || |||||||| || ||||| ||||| | || || | ||
Sbjct 41693 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGC 41752
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| ||||||| |||||||| || | || | ||| || ||||| || ||
Sbjct 41753 TTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 41812
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|||| | | ||| | ||||| || || || || | ||||||||| || || ||
Sbjct 41813 CTCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGT 41871
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
|| || || || ||||||||||||
Sbjct 41872 CAAAGTCTTGACGAAGATCTGCATA 41896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703859787200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |