Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 >seq6 Length=1958011 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||||||| ||||| |||| || | || Sbjct 41465 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGC 41524 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT- 33665 || ||||| ||||||| |||||||| || | || | ||| || ||||| || || Sbjct 41525 TTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 41584 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || || ||| | ||| | |||||| || || || || | ||| ||||| || || | Sbjct 41585 CTCTT--AACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGG 41642 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | ||| || |||||||||||||| Sbjct 41643 TAAGCGTCTTCACAAAGATCTGCAT 41667 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| || ||||| ||||| | || || | || Sbjct 41693 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGC 41752 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| ||||||| |||||||| || | || | ||| || ||||| || || Sbjct 41753 TTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 41812 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| | | ||| | ||||| || || || || | ||||||||| || || || Sbjct 41813 CTCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGT 41871 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || || |||||||||||| Sbjct 41872 CAAAGTCTTGACGAAGATCTGCATA 41896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703859787200