Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq3 84.2 2e-11 >seq6 Length=1958011 Score = 104 bits (114), Expect = 2e-17 Identities = 318/484 (66%), Gaps = 11/484 (2%) Strand=Plus/Minus Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 || |||||| | ||||| || |||||| | ||||| | || | || ||||| Sbjct 63575 AAGAAGGCCGACTGGGCGCTGCGCTGGATCTCGGACGAGAAGTCTTCGTTTGCTGAGCGT 63516 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 || | || || || ||||| ||| | || || |||||| |||||| |||| || Sbjct 63515 CTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTC 63456 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | || | ||| | ||||| || || || ||| |||||| | || |||||| Sbjct 63455 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGC 63396 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAA 47011 ||||| || || ||||| |||||||| || || || || |||| | | Sbjct 63395 GACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTT----ACGCACCTCCGCCGCCG 63340 Query 47012 ATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTT 47071 || | ||| ||| || || | | |||||| || | || || ||||||| Sbjct 63339 CCCGCACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTT 63280 Query 47072 TTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAAT 47130 | || | |||||| |||||| | || | ||||||||||| | | || |||||| | | Sbjct 63279 CCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGC-CGGACTCATGTGCCAGT 63221 Query 47131 ATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATG 47190 | ||||||||||| || || |||||| | || ||||| ||| ||| | || | Sbjct 63220 ACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGG-CAA-CGAGAAGACGTACTA 63163 Query 47191 CTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248 |||| || || || || |||||| | | || |||||| ||||||| |||| || || Sbjct 63162 CTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTT 63103 Query 47249 CGAG 47252 |||| Sbjct 63102 CGAG 63099 >seq3 Length=3222897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 51739 CATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCGG 51798 || |||| | ||| || |||||||| | | |||| ||| || |||||||| || | | Sbjct 747646 CACTGCCGAGGTCTCCAACGTGGCGGACCTTGGCGTCCGGGGCACCGTGGTC-CTTCTTG 747588 Query 51799 TG-GGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 51857 | ||||||||||| ||| ||||| ||||||||||| | ||| || || ||||| Sbjct 747587 TACGGGTTGAAGTGGGGGCCGGCCGAGGTGCAGCCGTTCGAGAGGTCACCAAACTCGTGG 747528 Query 51858 ACGTGGAATCCGTGC 51872 |||||||| |||||| Sbjct 747527 ACGTGGAAGCCGTGC 747513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610991482600