Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=4354190 Score = 143 bits (158), Expect = 3e-29 Identities = 199/275 (72%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTGGCCCCAAA 147290 |||||||||||||| ||||| |||| ||| |||| | |||| |||||| || Sbjct 191099 AGCTGGTCCACGCCTTGGCCGGTATAGTC-GTCGTCGCACGTCTTGTACTCGGCCCCGAA 191157 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGC---CGGGCTTTCTGTGCGAGAA 147347 || | |||||||||||||||||| || |||||||||| || || | |||| || Sbjct 191158 ATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGCGC---CGGTGCCCGAG 191214 Query 147348 GCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGC 147407 ||| | || | ||| ||||| || ||||| | ||||||||||| ||| |||||||| Sbjct 191215 CCCCACGCGGTCGAGGTACTCGCGGCTCCCGTTGCCGTCCCAGATGTGCACGCCCTTGGC 191274 Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 || ||| || ||||||| |||| || ||||| ||||||||||| | || || Sbjct 191275 GGCCAGCGCCGCGCCGTCCGTGTTGCCCGAGACAAACCACAGCAGCTCCTCAATGACGCC 191334 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 | | ||||| | |||||||||||| || |||| Sbjct 191335 GCGCGTGAAGACGCGCTTGGTGGTCAGGAGCGGGA 191369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487744724000