Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 228 1e-54
seq5 105 8e-18
seq6 100 4e-16
>seq1
Length=6947394
Score = 228 bits (252), Expect = 1e-54
Identities = 1146/1811 (63%), Gaps = 45/1811 (2%)
Strand=Plus/Plus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
||||| ||||| || ||||||||||| || | ||||| |||| | ||||| || | |
Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480
|||| || | || || | | | | || ||| | ||| |||| |||| ||||
Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACT--GGTCGATGA 1521316
Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540
|| || || | || || | |||||||| ||||| | ||| ||||| || ||
Sbjct 1521317 AGGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCT 1521376
Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600
|||| |||||| || || |||||| | | || | |||||||||||| ||||
Sbjct 1521377 TGTAGATGGCCTTGATGTCGTCGGGGATACCAGGAATGTGCTGGATGGAACCACCCGAAG 1521436
Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660
| | ||| | |||||| |||| | ||||||||||| || |||||||| || |
Sbjct 1521437 CAATGACGAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGTCAC-GA--A 1521493
Query 110661 GGTGCTTGTTGACAATGACA---AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717
|| || | | | ||| || ||||||| || | | | ||||| | |
Sbjct 1521494 GGAGCCAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCG 1521553
Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777
||||| || || ||||| || || || | || || | ||| ||||| || ||||
Sbjct 1521554 AGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCA 1521613
Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837
| || || | | || ||| || | ||| | || || || ||| | |
Sbjct 1521614 TAGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTTGGCAATCTTCTCACGGAGCTCGT 1521673
Query 110838 CCCAGTCGTAGTTGAGCTTGGTTTCACCT---TCCCACATGTCAAACTGAAGCACCCCTT 110894
|||||| || || | ||| | | | ||| | ||| ||||||||| || |
Sbjct 1521674 CCCAGTTCCAG---AGGTCGGTAGGAACGCGGTTCCAGAGGTCGAACTGAAGCTTGCCCT 1521730
Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954
| || ||| |||||||| | | |||| || | |||||| |||||
Sbjct 1521731 GCGAGATGGGCGAACCCTCGTACGAGGGGTAGGTGCCAGCCTCGACAGCCATCTCACACG 1521790
Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014
|| ||| || | ||||| || ||||| || ||||| | || | || ||
Sbjct 1521791 ACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGACGAGCAG 1521850
Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074
| || || || | |||| || || || || ||||| || ||||| |
Sbjct 1521851 CGGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCCTGGACACCGA 1521910
Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 111131
||||| || | ||| ||||| || || || || || ||| ||||| || | |
Sbjct 1521911 GACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC---CTCGGGGACGGGGTAGTAGT 1521967
Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191
| | ||||| | || || || ||||| || | ||| ||||| || || || || |
Sbjct 1521968 TGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCT 1522027
Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251
| || | ||| |||| | |||| | || || ||||| || || | |
Sbjct 1522028 TGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCAAGGT 1522087
Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311
|||| || || ||| || | | |||||| | || || || || | ||||||
Sbjct 1522088 TGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAGAGGTTGGACG 1522147
Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371
||| || || |||| | || ||||| ||| |||| || |||||||||||||
Sbjct 1522148 ACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCA 1522207
Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCT 111430
|| |||| || ||||| ||||| | | || || | ||| | | || | | ||
Sbjct 1522208 TGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCT 1522267
Query 111431 GGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAAC 111487
| |||| ||| ||| | || ||| ||||||||| |||||| || ||||||
Sbjct 1522268 TG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGCCTCAAAC 1522323
Query 111488 TCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545
||||| | | | |||| |||||||| || || | | || || | || | ||| |
Sbjct 1522324 TCCTC--CGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGT 1522381
Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605
||| | |||| || ||||||||||| ||||| || ||||| |||| | ||||| |
Sbjct 1522382 CGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGT 1522441
Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665
| | | ||| |||| || | || ||||| || | || ||||| || | || |
Sbjct 1522442 CACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGT 1522501
Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCT 111718
| |||||||| |||||||| |||| || | | || ||| | | | ||| | |
Sbjct 1522502 CGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGT 1522561
Query 111719 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 111778
|| | || || || || |||| || | || ||||| || | |||||| | ||
Sbjct 1522562 CGA----CGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAG 1522617
Query 111779 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 111838
| ||| || || || ||| || ||||| | | | |||||||| | ||
Sbjct 1522618 TAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCG 1522677
Query 111839 ATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTG 111898
||||| || || ||| ||||| || || || | | || || | |||||||||| |
Sbjct 1522678 ATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCG 1522737
Query 111899 ATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCA 111958
|| ||||||||||| |||||| ||||||||| |||||||| || | || ||||||
Sbjct 1522738 ATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCA 1522797
Query 111959 GCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTC 112018
|| ||||||||||| || | ||||| |||| | | ||||| || ||| |||
Sbjct 1522798 GCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGTC 1522857
Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078
|| | ||| ||||||| || |||||||| ||||| | || ||||||| ||||| |
Sbjct 1522858 TCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCATGTGC 1522917
Query 112079 TGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTG 112138
|| || || || |||| |||| || | || || ||||||||| |||
Sbjct 1522918 TGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGGGTCTTG 1522977
Query 112139 AGACCAAAGTA 112149
| ||||||||
Sbjct 1522978 AAGCCAAAGTA 1522988
>seq5
Length=2075171
Score = 105 bits (116), Expect = 8e-18
Identities = 224/330 (68%), Gaps = 6/330 (2%)
Strand=Plus/Minus
Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679
|||||| | || ||||||||||| | ||||| ||||| || || | | |||| |
Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907
Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739
| || || ||||| || | || ||| ||||| || |||||||||||||| | |
Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847
Query 11740 GGCAGAGCACTGG-ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798
| ||| || | | ||| || || || | ||||| ||| | || |||||| || |
Sbjct 652846 ACCCGAG-ACGGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAGCG 652788
Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856
|||| || ||||| ||| |||| ||| | |||||| || ||||||||||| || ||
Sbjct 652787 TCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCCGAGCT 652728
Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916
|| || || | || | |||||| || | |||| ||| || || || |||||
Sbjct 652727 TC--TCGTACTTCGCCGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGC 652670
Query 11917 CGCGTCAATCCCCTCAACATCACTGAAGCG 11946
| |||| || || | || || | ||||||
Sbjct 652669 CTCGTCCATGCCAGCGACGTCGCGGAAGCG 652640
>seq6
Length=1958011
Score = 100 bits (110), Expect = 4e-16
Identities = 125/171 (73%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| || || ||||| || || || |||||| |||||
Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
|||||||| || |||||||| | ||| | || | | || || || |||||||||||
Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT 122828
||||| || |||||||||| || || || || || || ||||||
Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTT 63536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031725236000
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