Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-54 seq5 105 8e-18 seq6 100 4e-16 >seq1 Length=6947394 Score = 228 bits (252), Expect = 1e-54 Identities = 1146/1811 (63%), Gaps = 45/1811 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| ||||| || ||||||||||| || | ||||| |||| | ||||| || | | Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 |||| || | || || | | | | || ||| | ||| |||| |||| |||| Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACT--GGTCGATGA 1521316 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540 || || || | || || | |||||||| ||||| | ||| ||||| || || Sbjct 1521317 AGGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCT 1521376 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 |||| |||||| || || |||||| | | || | |||||||||||| |||| Sbjct 1521377 TGTAGATGGCCTTGATGTCGTCGGGGATACCAGGAATGTGCTGGATGGAACCACCCGAAG 1521436 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | | ||| | |||||| |||| | ||||||||||| || |||||||| || | Sbjct 1521437 CAATGACGAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGTCAC-GA--A 1521493 Query 110661 GGTGCTTGTTGACAATGACA---AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717 || || | | | ||| || ||||||| || | | | ||||| | | Sbjct 1521494 GGAGCCAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAGTAGAGCATCG 1521553 Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||| || || ||||| || || || | || || | ||| ||||| || |||| Sbjct 1521554 AGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCGGTGGGCA 1521613 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 | || || | | || ||| || | ||| | || || || ||| | | Sbjct 1521614 TAGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTTGGCAATCTTCTCACGGAGCTCGT 1521673 Query 110838 CCCAGTCGTAGTTGAGCTTGGTTTCACCT---TCCCACATGTCAAACTGAAGCACCCCTT 110894 |||||| || || | ||| | | | ||| | ||| ||||||||| || | Sbjct 1521674 CCCAGTTCCAG---AGGTCGGTAGGAACGCGGTTCCAGAGGTCGAACTGAAGCTTGCCCT 1521730 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 | || ||| |||||||| | | |||| || | |||||| ||||| Sbjct 1521731 GCGAGATGGGCGAACCCTCGTACGAGGGGTAGGTGCCAGCCTCGACAGCCATCTCACACG 1521790 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 || ||| || | ||||| || ||||| || ||||| | || | || || Sbjct 1521791 ACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGACGAGCAG 1521850 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 | || || || | |||| || || || || ||||| || ||||| | Sbjct 1521851 CGGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCCTGGACACCGA 1521910 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 111131 ||||| || | ||| ||||| || || || || || ||| ||||| || | | Sbjct 1521911 GACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC---CTCGGGGACGGGGTAGTAGT 1521967 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | | ||||| | || || || ||||| || | ||| ||||| || || || || | Sbjct 1521968 TGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGGAGCTTCT 1522027 Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | || | ||| |||| | |||| | || || ||||| || || | | Sbjct 1522028 TGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCAGGGAGAGCGATCGAGGCAAGGT 1522087 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 |||| || || ||| || | | |||||| | || || || || | |||||| Sbjct 1522088 TGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAGAGGTTGGACG 1522147 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 ||| || || |||| | || ||||| ||| |||| || ||||||||||||| Sbjct 1522148 ACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCCTTGTAGAGCA 1522207 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCT 111430 || |||| || ||||| ||||| | | || || | ||| | | || | | || Sbjct 1522208 TGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGCTTCTGAGCCT 1522267 Query 111431 GGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | |||| ||| ||| | || ||| ||||||||| |||||| || |||||| Sbjct 1522268 TG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGCCTCAAAC 1522323 Query 111488 TCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 ||||| | | | |||| |||||||| || || | | || || | || | ||| | Sbjct 1522324 TCCTC--CGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGT 1522381 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 ||| | |||| || ||||||||||| ||||| || ||||| |||| | ||||| | Sbjct 1522382 CGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGT 1522441 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 | | | ||| |||| || | || ||||| || | || ||||| || | || | Sbjct 1522442 CACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGT 1522501 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCT 111718 | |||||||| |||||||| |||| || | | || ||| | | | ||| | | Sbjct 1522502 CGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCTCCCTGGT 1522561 Query 111719 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 111778 || | || || || || |||| || | || ||||| || | |||||| | || Sbjct 1522562 CGA----CGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTCGAG 1522617 Query 111779 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 111838 | ||| || || || ||| || ||||| | | | |||||||| | || Sbjct 1522618 TAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCG 1522677 Query 111839 ATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTG 111898 ||||| || || ||| ||||| || || || | | || || | |||||||||| | Sbjct 1522678 ATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCG 1522737 Query 111899 ATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCA 111958 || ||||||||||| |||||| ||||||||| |||||||| || | || |||||| Sbjct 1522738 ATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGGTACCA 1522797 Query 111959 GCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTC 112018 || ||||||||||| || | ||||| |||| | | ||||| || ||| ||| Sbjct 1522798 GCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGTAAGTC 1522857 Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078 || | ||| ||||||| || |||||||| ||||| | || ||||||| ||||| | Sbjct 1522858 TCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCATGATCATGTGC 1522917 Query 112079 TGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTG 112138 || || || || |||| |||| || | || || ||||||||| ||| Sbjct 1522918 TGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGGGTCTTG 1522977 Query 112139 AGACCAAAGTA 112149 | |||||||| Sbjct 1522978 AAGCCAAAGTA 1522988 >seq5 Length=2075171 Score = 105 bits (116), Expect = 8e-18 Identities = 224/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 |||||| | || ||||||||||| | ||||| ||||| || || | | |||| | Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | || || ||||| || | || ||| ||||| || |||||||||||||| | | Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847 Query 11740 GGCAGAGCACTGG-ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 | ||| || | | ||| || || || | ||||| ||| | || |||||| || | Sbjct 652846 ACCCGAG-ACGGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAGCG 652788 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 |||| || ||||| ||| |||| ||| | |||||| || ||||||||||| || || Sbjct 652787 TCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCCGAGCT 652728 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 || || || | || | |||||| || | |||| ||| || || || ||||| Sbjct 652727 TC--TCGTACTTCGCCGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGC 652670 Query 11917 CGCGTCAATCCCCTCAACATCACTGAAGCG 11946 | |||| || || | || || | |||||| Sbjct 652669 CTCGTCCATGCCAGCGACGTCGCGGAAGCG 652640 >seq6 Length=1958011 Score = 100 bits (110), Expect = 4e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| || || ||||| || || || |||||| ||||| Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | | || || || ||||||||||| Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT 122828 ||||| || |||||||||| || || || || || || |||||| Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTT 63536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031725236000