Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 seq6 138 1e-27 seq4 104 3e-17 >seq1 Length=6947394 Score = 260 bits (288), Expect = 2e-64 Identities = 690/1046 (66%), Gaps = 27/1046 (3%) Strand=Plus/Plus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || ||||| ||||||||||| |||| ||||| || | ||| || || || || || Sbjct 1521889 TCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGC- 1521947 Query 118587 GTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 118643 ||| ||||| || | || | ||| || | | || || |||||||| ||| Sbjct 1521948 --CTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACC 1522005 Query 118644 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 118703 || ||||| || || ||||| | | | || | || |||| | |||| | | Sbjct 1522006 TTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGACAAAGGCA 1522065 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || ||||| || || || || || || | ||| || | || |||||| || Sbjct 1522066 GGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATG 1522125 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| | ||| || ||| ||||| |||| || || || || ||||| | Sbjct 1522126 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGG 1522185 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| |||||| | || || ||||| || |||| || || || Sbjct 1522186 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATG 1522245 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTA 118939 | ||||| | || | || | ||| ||| | | ||||| |||||| Sbjct 1522246 GAGAACCAGAGCTTCTGAGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCGCTCGTA 1522301 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999 ||| |||||| || |||||||| || | | || ||||| || || || | Sbjct 1522302 CTTCTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGC 1522361 Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059 ||||| | ||| | ||| | ||| | |||| || ||||||||||||||||| ||||| Sbjct 1522362 AGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGAT 1522421 Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 119119 |||||| || ||||||| || ||| ||| | || || | || || || || | Sbjct 1522422 CCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAG 1522481 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--- 119176 || | ||||| | || || |||||||| || || ||||| | || | | || Sbjct 1522482 GTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGG 1522541 Query 119177 ---CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 ||| | | || |||||| || || | ||||| |||| || |||| ||||| Sbjct 1522542 GCGCTT--GTTG-CCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCAT 1522598 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTG 119291 || | ||||| | || | || || || || ||| |||| | | |||| | | Sbjct 1522599 GGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCT--TGGCACGG 1522656 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | || Sbjct 1522657 ATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 1522716 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| || ||||||||||| |||| | |||| |||||||| |||| Sbjct 1522717 AGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGAC 1522776 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 || || || |||| ||||||||||||||||| || || | |||||| |||| | Sbjct 1522777 ATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGC 1522836 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 | ||||| || ||| ||||| | ||| | ||||| || ||||| ||||||||| Sbjct 1522837 TCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATC 1522896 Query 119532 GAGACCCGCATAAACATGTATTGGGG 119557 || || ||||| | ||||| ||||| Sbjct 1522897 GACACGCGCATGATCATGTGCTGGGG 1522922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 200/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| || || |||||||| || |||||||| | || | ||||| |||| Sbjct 1521199 CGGAGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1521258 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || |||| | || | | | | || ||| | || || || ||||||||| Sbjct 1521259 AGCTGCGAGAACGACGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 1521318 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 ||| || || || || | ||||| || ||||| | || ||||| || ||| || Sbjct 1521319 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAGACGGTCTTG 1521378 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGATCCACCCG---C 118072 |||| | ||| || || || |||||| ||| || | | |||||||| ||||||| | Sbjct 1521379 TAGATGGCCTTGATGTCGTCGGGGATA-CCAGGAATGTGCTGGATGGAACCACCCGAAGC 1521437 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATC 118126 |||| ||| | |||||| |||| ||||||||||| || |||| || Sbjct 1521438 AATGAC---GAGCTGCTTCATCTCCTCGTCCCAGAGACCAAGGTTGATGAGGTC 1521488 >seq6 Length=1958011 Score = 138 bits (152), Expect = 1e-27 Identities = 179/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || || ||||| || ||||||||| ||||| Sbjct 63369 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACC 63428 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | ||| ||||| ||||||||||| Sbjct 63429 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 63488 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191 ||||| || || ||||||| |||||||||||||| || ||||| || Sbjct 63489 GCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCAAACGA---AGACTTCTCGTCCGA 63545 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | ||| || |||||| | ||||| |||| ||| ||||| | | ||| || || | Sbjct 63546 GATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTCTCAATGGCGTT 63605 Query 130252 AAAGAG 130257 ||||| Sbjct 63606 GAAGAG 63611 >seq4 Length=2551142 Score = 104 bits (114), Expect = 3e-17 Identities = 191/276 (69%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 129886 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 129945 ||| || ||||| ||| ||||| ||||||||| | |||| |||| || || || || Sbjct 1013254 GTTGATGCCGATCAGGGCGCATGGCAGCGCGTCCGTCAGGAACTCCTTTTCGATTTCGAC 1013313 Query 129946 AGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGA 130004 || || ||||| || |||| | |||| ||| | | ||| | || | | Sbjct 1013314 GGCCTCGCGCACAATCTCGTGCACCTGCTCC-TGCGGGCACCGGTGCTTGAGGTGCCCGT 1013372 Query 130005 AGAGTTCCACG---GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCG 130061 | || || | ||||| || ||| | |||||||| || |||||||| || || | Sbjct 1013373 ACAG---CAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGG 1013429 Query 130062 AGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGC 130121 | || ||| || ||||||| || |||||||| | |||||| || || ||| |||| Sbjct 1013430 AAAACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGC 1013489 Query 130122 CAGAGAAGAAGATCCCCTCCACACACGCGAACGCAA 130157 | ||||||||||| ||||| || ||||| ||||||| Sbjct 1013490 CCGAGAAGAAGATGCCCTCGACGCACGCAAACGCAA 1013525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434929434600