Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq6 122 1e-22 seq9 120 4e-22 seq4 98.7 1e-15 seq5 91.5 2e-13 >seq1 Length=6947394 Score = 244 bits (270), Expect = 1e-59 Identities = 688/1045 (66%), Gaps = 25/1045 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||||||| | |||||||| || || || ||||||| ||| Sbjct 1522922 CCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGACAAGGTC 1522863 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||| | | |||| ||||| | || ||||||||| Sbjct 1522862 ATTGAGACTTACAACCTCATGTCGGAGCGCTACTTCACCCACGCCTCGCCTACCCTCTTC 1522803 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || |||||||| || | ||||| ||||| ||||||||| |||||| ||||||||| Sbjct 1522802 AACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGAGGAC 1522743 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| |||||||||| | || || | | || || || ||||| ||| || || Sbjct 1522742 TCGATCGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 1522683 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 ||||| || | |||||||| | | | ||||| || ||| || || || Sbjct 1522682 GGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCCGGTACCAAC 1522623 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 ||| | || | |||||| | || ||||| || | || |||| || || || || | Sbjct 1522622 GGTTACTCGAACGGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCTCGTTACG-- 1522565 Query 104582 AATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | | ||| | | | ||| || | | || |||| |||||||| ||||| Sbjct 1522564 --TCGACCAGGGAGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCA 1522507 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| || || | || ||||| || | || ||||| || | ||||||| | ||| Sbjct 1522506 CGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTC-GTG 1522448 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || || ||||||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 1522447 CTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCG 1522388 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 |||| | ||| | ||| | || || | | || || |||||||| || | | | Sbjct 1522387 ATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTCGG 1522328 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 |||||||||| || || ||| ||||||||| | ||| | | | | || ||| | Sbjct 1522327 AGGAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCG-AGGGCAAGGGTC-GCAAGACCAT 1522270 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | | ||| | || || || | || || ||||||||| || | Sbjct 1522269 -CAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGGTGGCCCCT 1522211 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| ||||| |||||| |||| ||| || || || | ||||| |||| Sbjct 1522210 TCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGGTACCATCA 1522151 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| ||||| || || ||| | || | | || ||| || || | Sbjct 1522150 AGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGTTGCCGTCT 1522091 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | ||||| || || ||||||||||| | ||| || |||| || || | || | Sbjct 1522090 GCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGTCGACTTTGAGAACAACACCTACGACT 1522031 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || |||||||| | || || |||||||| ||||| || | || || Sbjct 1522030 TCAAGAAGCTCCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACTGTGTCATCTCGC 1521971 Query 105171 GAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| ||| || || || || || ||| | ||||| || ||| Sbjct 1521970 GCAACTACTACCCCGTCCCCGAG---GCCCGCAACTCGAACATGCGTCACCGCCCCGTTG 1521914 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGA 105252 |||||||||| |||||||| || || Sbjct 1521913 GTCTCGGTGTCCAGGGTCTTGCCGA 1521889 >seq6 Length=1958011 Score = 122 bits (134), Expect = 1e-22 Identities = 177/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCA-AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAA 94772 ||||| | ||||| | |||| ||||||| || | ||||| || || ||||| || Sbjct 63611 CTCTTCAACGCCATTGAGAACA-TTCCGTGCATCAAGAAGAAGGCCGACTGGGCGCTGCG 63553 Query 94773 GTGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | || ||||| ||| ||||||||||| || | || ||||| || Sbjct 63552 CTGGATCTCGGACGAGAAGTC---TTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGT 63496 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 94889 ||||| ||||||||||| || || || | | || | |||||||||||||| || || Sbjct 63495 CGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCT 63436 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 94949 |||||| |||||| |||||| |||||||| || || || |||||||| |||||| || Sbjct 63435 CATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGA 63376 Query 94950 GTTTGC 94955 ||||| Sbjct 63375 CTTTGC 63370 >seq9 Length=1289175 Score = 120 bits (132), Expect = 4e-22 Identities = 322/490 (66%), Gaps = 2/490 (0%) Strand=Plus/Minus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||| ||||| || | |||||| | |||||||||||| | || || | ||| Sbjct 1226948 AACCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGT 1226889 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | || ||||| || | ||||| |||| | ||||||||||| | || || | Sbjct 1226888 ACTCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGG 1226829 Query 168396 GATCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454 | | |||||| | |||| ||| | || || || || ||||| | | | | Sbjct 1226828 GGTGGAAGATCGTGCGGGTCAT-GCGGGGGACGTTGGTGAAAATATAACGAGGGCTGGCC 1226770 Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 |||||||| |||||| | || ||||| |||||||| ||||| ||||| ||||| Sbjct 1226769 GCATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATG 1226710 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || | |||| | || | ||||||||| | | | | |||| Sbjct 1226709 TTGTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCG 1226650 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634 ||||||||||| || ||||||| | || | | | | ||| || || || || || Sbjct 1226649 CCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCC 1226590 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | |||||| || |||||| ||| |||| |||||||| || ||||||||| || Sbjct 1226589 TTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTGCGCTGACCAGGCTTGAGGCCG 1226530 Query 168695 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 168754 || || | | ||| ||||| | || |||| |||| || ||| |||||| Sbjct 1226529 TCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTCCTTG 1226470 Query 168755 TGTACAAAGT 168764 | ||||||| Sbjct 1226469 TTGACAAAGT 1226460 >seq4 Length=2551142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 94874 || |||||||| || ||||| ||||||||||| || || || |||| | || | ||||| Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCATCTTCTGGCT 1013465 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 ||||||||| || ||||||| || || || ||||||||||| ||||| || ||||| Sbjct 1013464 CAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGA 1013405 Query 94935 GGGACTCCACCAAGAGTTTGC 94955 ||| | ||| || ||||| Sbjct 1013404 GGGCATGCACACCGACTTTGC 1013384 >seq5 Length=2075171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||| || | ||| ||||||||||| | ||||| ||| || || || | | ||| Sbjct 652966 CTTGCCGATGGCGTCAATCTCATCCACGAAGATGATACACGGCGCGTTCTTCCTGGCGGT 652907 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || || || || |||||| || || ||||| || |||||||||||||| | | Sbjct 652906 CGCGAACAGGTCGCGCACACGCGAGGGACCGACACCGACGAACATCTCCACAAACTCGGA 652847 Query 9814 GGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | || || ||| |||||| || || | ||||| || | || |||||| || Sbjct 652846 ACCCGAGAC---GGACAGGAAGGGCACCTTGGCCTCACCGGCGGTCGCCTTGGCGAGCAG 652790 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||||| ||| |||| ||||| ||| || || || ||||||||||| Sbjct 652789 CGTCTTACCGGTACCGGGCGGGCCCGAGAGGATGGCGCCGCGCGGGATCTTGGCGCC 652733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260544823400