Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 132 1e-25 seq1 104 7e-17 >seq7 Length=1486079 Score = 132 bits (146), Expect = 1e-25 Identities = 400/615 (65%), Gaps = 2/615 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | | || |||||||| | || || || || | Sbjct 875158 CCCGAGGAGATCTCGTCGATGGTCCTTATCAAGATGAAGGAGACCGCCGAGGCTTACCTT 875217 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | || || | | || ||| | || || || ||||| || || || |||||||| Sbjct 875218 GGCGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCCCAGCGT 875277 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | |||||| || | | || || | || || || || Sbjct 875278 CAGGCCACCAAGGACGCCGGTACCATTGCCGGCCTCGACGTCCTCCGTATCATCAACGAG 875337 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | || || || || || || Sbjct 875338 CCCACCGCCGCCGCCATCGCCTACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAACGTT 875397 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || || | ||||| || || || ||||| || || || || |||| ||||| Sbjct 875398 CTCATCTTCGACCTCGGTGGAGGAACCTTCGATGTCTCGCTCCTTACCATTGAGGAGGGC 875457 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || ||||| || ||||||||||| || || || || || Sbjct 875458 ATCTTCGAGGTCAAGGCTACCGCCGGTGACACCCATCTTGGTGGTGAGGACTTCGACAAC 875517 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 |||||||| || || || | || || ||||| |||| || | || | | Sbjct 875518 CGTCTCGTCAACCACTTCGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACCTCTCGGG 875576 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || | || | || || || | || || || || ||||| || || || | || Sbjct 875577 CAACGCTCGTGCCCTCCGCCGTCTCCGCACCGCTTGCGAGCGTGCCAAACGCACCCTCTC 875636 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | |||| ||||| || || ||||| || || || |||| || |||| | Sbjct 875637 GTCTGCCGCCCAGACCTCGATCGAGATTGACTCGCTCTTCGACGGCATCGACTTCTACAC 875696 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || |||||||| || || || | || ||| || || | | || ||||| Sbjct 875697 CTCGATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGA 875756 Query 350131 TCCTGTGGAAAAAGT 350145 || || || || || Sbjct 875757 GCCCGTCGAGAAGGT 875771 >seq1 Length=6947394 Score = 104 bits (114), Expect = 7e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 6691145 CATACCACCACGCAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 6691086 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 6691085 CGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 6691026 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || |||| || || | || Sbjct 6691025 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTC 6690966 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || || || || || || ||||||||| Sbjct 6690965 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 6690914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253720503105