Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 268 1e-66 seq9 154 2e-32 seq4 84.2 2e-11 >seq1 Length=6947394 Score = 268 bits (296), Expect = 1e-66 Identities = 420/593 (71%), Gaps = 6/593 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 |||||||||| | | ||||||||||| ||| || | || | ||| |||||| ||| Sbjct 1522909 TCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGACAAG-GTCATTGAGACTTAC 1522851 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| | ||||| || |||||| |||| ||||| |||||||||||||| Sbjct 1522850 AACCTCATGTCGGAGCGCTACTTCACCCACGCCTCGCCTACCCTCTTCAACGCTGGTACC 1522791 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 |||| ||||||||| |||||||| || || |||||||| |||||||||||||| Sbjct 1522790 CCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGAGGACTCGATCGACGGT 1522731 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| || ||||| ||||||||| | || ||||||||| || Sbjct 1522730 ATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGCGGTATCGGTCTC 1522671 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 ||| | ||| ||||||| || || | || || || ||||| | | | Sbjct 1522670 CACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCCGGTACCAACGGTTACTCGAAC 1522611 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || || || |||||||| | | | || || || || |||||| ||||||| || Sbjct 1522610 GGTATTGTCCCCATGCTCCGTGCATACGACGCTACTGCTCGTTACGTCGACCAGGGAGGC 1522551 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| || | || ||||||||||| ||||| |||||||||||| | | || Sbjct 1522550 AACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGAC 1522491 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TA 53669 || ||||| || || ||| || || | || ||| | || ||| |||||||| || || Sbjct 1522490 TTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG-TGCTCGTGACCTCTTCTA 1522432 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || || ||||| || |||||||||||| | || ||| || | || ||| || Sbjct 1522431 C-GCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCGATGGCGACTGGACCC 1522373 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 | |||||||| |||||||||||| ||| || ||| || ||||||||| Sbjct 1522372 TCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTCGGAGGAGTTT 1522320 Score = 109 bits (120), Expect = 6e-19 Identities = 500/774 (65%), Gaps = 48/774 (6%) Strand=Plus/Minus Query 55183 GGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGA 55242 ||| ||||| || ||| | || ||||| ||| | | ||||||| ||||| | ||||| Sbjct 1521948 GGCCCGCAACTCGAACATGCGTCACCGCCCCGTTGGTCTCGGTGTCCAGGGTCTTGCCGA 1521889 Query 55243 CATCTTCATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGA 55302 || ||||||| ||| | |||||||||||||| ||||||| | | |||| | Sbjct 1521888 CACCTTCATGGCTCTCCGCATGCCCTTCGACTCGCCCGCTGCTCGTCAGCTCAACCTCCA 1521829 Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGC 55360 |||||| || | ||||||| || || |||||| ||||||| | ||||| | ||| Sbjct 1521828 GATCTTCGAGAC-CATCTACCACGCTGCTCTCGAGTCGTCGTGTGAGATGGCTGTCGAG- 1521771 Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCC-AGCTGACAAGGGACTTCTCCAGTTCGA 55419 | || |||||| ||| | | |||||| | || || || | || |||||||| Sbjct 1521770 GCTGGCACCTACCCCTCGTACGAGGGTTCGCCCATCTCGCAGGGCAAG-CTTCAGTTCGA 1521712 Query 55420 TCTATGGGGCAA-GT-----CTGACCCCATG---TTTGACAAGTT------GAAGCATGA 55464 || ||| | || | |||| | | | ||| || | |||| || Sbjct 1521711 CCTCTGGAACCGCGTTCCTACCGACCTCTGGAACTGGGACGAGCTCCGTGAGAAGATTGC 1521652 Query 55465 CATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGAC 55524 || ||| ||| | |||||||| || ||||| || || ||||| ||||| ||||| Sbjct 1521651 CAAGCACG-GTG-----TCCGCAACTCGCTCCTCGTTGCCCCTATGCCCACCGCCTCGAC 1521598 Query 55525 GGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCG 55584 | ||||| | ||| |||||| |||||||| ||||| | | ||||| ||| Sbjct 1521597 CTCGCAGATTCTCGGCTGGAACGAGTGCTTCGAGCCCTACACCTCGATGCTCTACTCGCG 1521538 Query 55585 CCGGACCCTAGCAGGTGAGTTT---GTCATGATCAACAAGCACCT-CGTCAAGGACCTGC 55640 || || ||||||| || ||| | | | || ||| ||| ||||| Sbjct 1521537 TCGTGTTCTGTCAGGTGACTTCCAGGTCGTCTGCCCCTGGCTCCTTCGT----GACCTCA 1521482 Query 55641 AGAAGATCAACAAGTGGAACCCGCAGATCAAGACG---GATATTG-TGCGGAACGGGGGG 55696 || | ||| || | |||| ||| | | |||| | ||| | || Sbjct 1521481 TCAACCTTGGTCTCTGGGACGAGGAGATGAAGCAGCTCGTCATTGCTTCGG----GTGGT 1521426 Query 55697 TCCGTCCAGAA---TCTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTG 55752 ||| ||||| | || | || || | || | |||||| || ||| ||| || || Sbjct 1521425 TCCATCCAGCACATTCCTGGTATCCC-CGACGACATCAAGGCCATCTACAAGACCGTCTG 1521367 Query 55753 GGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA 55812 ||||||| | |||||| | |||||| | ||| || ||||| || | ||||||||| Sbjct 1521366 GGAGATTTCGCAGAAGGCCGTCATTGACCTTGCTGCCGACCGTGGAGCCTTCATCGACCA 1521307 Query 55813 GTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCA 55872 ||| ||||| || |||||| | | | || || || | | || | | ||||||||| Sbjct 1521306 GTCGCAGTCGCTCAACATCCACCTCGCCAACCCGTCGTTCTCGCAGCTCACCTCGATGCA 1521247 Query 55873 CTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| ||||| |||||| || |||||||| || || ||||| || || || || Sbjct 1521246 CTTCTACGGCTGGAAGCGCGGTCTCAAGACCGGCATCTACTACCTCCGCACGCG 1521193 >seq9 Length=1289175 Score = 154 bits (170), Expect = 2e-32 Identities = 277/403 (69%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| || || || |||||||||| |||| ||| || | | || || || Sbjct 1226946 CCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGTAC 1226887 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | || || || || || | | ||| || | || || | ||| || || Sbjct 1226886 TCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGGGG 1226827 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| ||| || ||||| | | ||||| || || || | |||||||||| Sbjct 1226826 TGGAAGATCGTGCGGGTCATGCGGGGGACGTTGGTGAAAATATAACGAGGGCTGGCCGCA 1226767 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| ||||| || || || || ||||| || ||||||||| ||||||| |||| Sbjct 1226766 TCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATGTTG 1226707 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||| || | ||||| || | | ||||||||| | || ||| ||||| ||| Sbjct 1226706 TTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCGCCG 1226647 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || || |||| ||||| | ||| || | | ||| || ||||| || ||| || Sbjct 1226646 TGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCCTTC 1226587 Query 152236 GTCAGGTTCTTCTTGAGA--CAGGCGTAAATCACCTTGCGCTG 152276 | ||||| | | ||| |||||| | || ||||||||||| Sbjct 1226586 TTGAGGTTG--CGTAAGAAGCAGGCGAACATGACCTTGCGCTG 1226546 Score = 132 bits (146), Expect = 5e-26 Identities = 298/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| || ||||| || || |||| ||| || | | |||| ||| || Sbjct 1226946 CCGGTACCAATACCGTCGGCACCGTTGATGAGAACCATGGGAATGGTGGGAAGATAGTAC 1226887 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | | || || || | | ||| ||||| | || | ||| || Sbjct 1226886 TCGGGCTCGATCTTCTGGCCATCTTCATTAAGGTAGTTGAGAATGGCGTCGTCGGCGGGG 1226827 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| || | |||| | | | | |||||||| ||||||| ||| || ||| Sbjct 1226826 TGGAAGATCGTGCGGGTCATGCGGGGGACGTTGGTGAAAATATAACGAGGGCTGGCCGCA 1226767 Query 117332 TCCTTGCCACCA-GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||| ||||| ||| | || |||||||| || || | ||||| | ||||| | ||| Sbjct 1226766 TCCTTTCCACCCTGCATG-CGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATGTT 1226708 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT--ACCTTGGAGGCTCGCCTCA 117448 |||| ||| ||| |||| || || | |||||||| || | | || || || Sbjct 1226707 GTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAA--CTGGCTTCG 1226650 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| || || |||| ||||| ||||| || | ||||| || ||||| || || Sbjct 1226649 CCGTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCC 1226590 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 | | ||||| || |||||| | || ||||||||||||| ||||| || || Sbjct 1226589 TTCTTGAGGTTGCGTAAGAAGCAGGCGAACATGACCTTGCGCTGACCAGGCTTGAGGCCG 1226530 Query 117569 TCCGCCACGTGAGGGATCGAACG 117591 || || || ||||| ||||| Sbjct 1226529 TCGGCAACCGAGGGGATGGAACG 1226507 >seq4 Length=2551142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||||| ||||| |||| || || |||||||| | ||| |||||||| Sbjct 1013423 TCGTTGGAAAACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCA 1013482 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGC-GTTGCGCGAA 74908 || || || |||||||||||| ||||| |||||||| || | |||| | |||| ||| Sbjct 1013483 AACGAGCCCGAGAAGAAGATGCCCTCGACGCACGCAAACGCAATCAGGCGGATGCG-GAA 1013541 Query 74909 CGGTGCATCG 74918 |||| | ||| Sbjct 1013542 CGGTACCTCG 1013551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215760593000