Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 293 3e-74
seq6 185 1e-41
seq9 136 5e-27
>seq1
Length=6947394
Score = 293 bits (324), Expect = 3e-74
Identities = 699/1047 (67%), Gaps = 15/1047 (1%)
Strand=Plus/Plus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| ||| || || ||||| || |||| | | |||||||| ||| |||||||
Sbjct 1521879 CATGAAGGTGTCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGA 1521938
Query 80775 -TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833
| || |||||| || | ||||| |||| |||||| | || ||||| |
Sbjct 1521939 GTTGCG-GGCCTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGG 1521997
Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-----TC-A 80887
| || ||| || | || || || |||| |||||| | ||| || || |
Sbjct 1521998 TGACGACCTTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGA 1522057
Query 80888 CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAA 80947
|||| || || || | || || || ||||| ||||| ||||| || | | |
Sbjct 1522058 CAAAGGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGT 1522117
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||| | ||| || ||||| | || || ||||| || |||||||||| | |||||| |
Sbjct 1522118 ACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCG 1522177
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||||| |||| |||||||||||| |||| | ||| ||| ||||| ||| | ||
Sbjct 1522178 ACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCT 1522237
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127
||||||| | ||| | || | ||||||| |||||| ||||| ||| |
Sbjct 1522238 CAAGGATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCT 1522297
Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187
| ||||| |||| | || |||| | ||| | || | ||| | |||||||
Sbjct 1522298 CGTACTTCTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACT 1522357
Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247
|| ||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||| |
Sbjct 1522358 CGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGG 1522417
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
|||||||||||||| ||| ||||| || ||| || ||||||| | || ||||| |
Sbjct 1522418 GGATCCAGAGGGCGTAGAAGAGGTCACGAGCA-CGAACCTCCTCCTTGCCGTGGTTCTTG 1522476
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | ||||| ||||| | || ||| || ||||| ||||| || || | ||| | |
Sbjct 1522477 CGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCA 1522536
Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| ||| ||| ||||||| ||||||||| ||||| |||| || |||| | |
Sbjct 1522537 CCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGC 1522596
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
|| |||| ||||| | || | |||||| ||||| | || ||| |||||||| ||
Sbjct 1522597 ATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGG 1522656
Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
| ||| ||| |||||||| || || | ||| || ||||| || || ||
Sbjct 1522657 ATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 1522716
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| ||| || || || || ||||| || | |||||| | | | ||| || |||
Sbjct 1522717 AGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGAC 1522776
Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663
||||| ||| | | || || ||||| || || || | ||||| |||| || ||
Sbjct 1522777 ATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGC 1522836
Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCGAT 81722
| ||||| |||| || || || |||| | || ||| | ||| ||||| ||||||||
Sbjct 1522837 TCCGACATGAGGTTGTAAGTCTCAATGAC-CTTGTCAATGTTGTCGCCGTGGATACCGAT 1522895
Query 81723 AGCTACACGCATAAACATGTACTGGGG 81749
| || ||||| | ||||| ||||||
Sbjct 1522896 CGACACGCGCATGATCATGTGCTGGGG 1522922
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| |||||||| || || |||||||| || || || ||||| |||||
Sbjct 6690914 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 6690973
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || | ||||| || || |||||||||||||| || || || |||||
Sbjct 6690974 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6691033
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || || || || ||||| |||||||| | || ||||| | ||||| ||
Sbjct 6691034 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6691093
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || ||| | || || || |||||
Sbjct 6691094 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 6691141
Score = 104 bits (114), Expect = 3e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064
|| || | |||||| | |||||| | ||||| || || ||||| ||||| ||||||
Sbjct 1521163 ACAGTGAACTGAATGGCGTTGGCCGAAGGACGCGTGCGGAGGTAGTAGATGCCGGTCTTG 1521222
Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124
|| || |||||||||||| | |||||| || |||||| || | | ||||| |
Sbjct 1521223 AGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGCGAGAACGACGGGTTGGCG 1521282
Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184
| | |||||| || ||||| ||||| |||||| || ||||| || || || | |||
Sbjct 1521283 AGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCAGCAAGGTCA 1521342
Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| | | ||| || | ||| ||||| || ||
Sbjct 1521343 ATGACGGCCTTCTGCGAAATCTCCCAGACGGT 1521374
>seq6
Length=1958011
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || |||||||| |||||
Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 42063 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 42004
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || || || ||||| |||||||| | |||||||| | ||||| ||
Sbjct 42003 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAAC 41944
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| ||||| || ||| | ||||||||||| ||
Sbjct 41943 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGCGGAGG 41897
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || || |||||||||||||| || ||||| ||||||
Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || ||||| |||||||||| || || || | ||||| ||
Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || ||| | ||||| || || ||
Sbjct 41715 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGG 41669
Score = 156 bits (172), Expect = 5e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|| ||||||||||| || || || ||||| ||||| || | ||||| || | |||
Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 42271
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| ||||| || |||||||||||||| || || || ||
Sbjct 42270 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 42211
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
||||| |||||||| | |||||||| | ||||| || |||| ||||| ||||| |||
Sbjct 42210 AAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTT 42151
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||| | ||||| ||||| ||
Sbjct 42150 CACCTCGTCCTTCGTCTCCGCGGAGG 42125
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||| || || |||||||||||||| || ||||| ||||||
Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41548
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || ||||| |||||||| | || || || | ||||| ||
Sbjct 41547 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 41488
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || ||||| || || || | || || || || || ||
Sbjct 41487 ATCCAGAAGGAGTCGACTCTCCACCTTGTTCTTCGACTCCGTGGCGGGCA 41438
Score = 104 bits (114), Expect = 3e-17
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 64701 GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGG 64760
||| ||||||| | ||||||| || |||||| || || || || ||||| || ||
Sbjct 63534 GTCTTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGG 63475
Query 64761 GTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTC 64820
|| || || || |||||||| || ||||| ||||| ||||| ||||| | || ||
Sbjct 63474 CTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTC 63415
Query 64821 GAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
||||||||| || || || |||||||| |||||| || |||||
Sbjct 63414 GAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGC 63370
>seq9
Length=1289175
Score = 136 bits (150), Expect = 5e-27
Identities = 302/451 (67%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013
|||| || || ||||| || || || ||||||||||||||| |||||||||||
Sbjct 1226498 GATAACATTCGTTCCATCCCCTCGGTTGCCGACGGCCTCAAGCCTGGTCAGCGCAAGGTC 1226557
Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073
|| | ||||||| || ||||| || || || ||||| || ||||| ||
Sbjct 1226558 ATGTTCGCCTGCTTCTTACGCAACCTCAAGAAGGAAATCAAGGTCGCCCAGCTCGGTGGT 1226617
Query 32074 TACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTC 32133
||||| | ||| | || || || ||||||||||| || | | ||| |||||
Sbjct 1226618 TACGTTTCGGAGAAGACAGCATACCACCACGGCGAAGCCAGTTTGATGTCCACGATTGTT 1226677
Query 32134 AACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAG 32193
|| || ||||||| |||||| || ||| | ||| | |||||||| || |||
Sbjct 1226678 GGTCTCGCCCAGAACTATGTCGGCAGCAACAACATCAACCTTCTCGAGCCCAACGGTCAG 1226737
Query 32194 TTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--C 32251
|| || || || | ||||| |||||||| || ||| | ||||| || |||||| |
Sbjct 1226738 TTCGGTACTCGCATGCAGGGTGGAAAGGATGCGGCCAGCCCTCGTTATATTTTCACCAAC 1226797
Query 32252 GTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACA 32311
||| | | | | ||| |||| ||| ||| |||| | ||||| || | ||||| |||
Sbjct 1226798 GTCCCCCGCAT--GACCCGCACGATCTTCCACCCCGCCGACGACGCCATTCTCAACTACC 1226855
Query 32312 ATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCT 32371
| ||| || || ||| | ||||||| | || ||| ||| |||| ||| |
Sbjct 1226856 TTAATGAAGATGGCCAGAAGATCGAGCCCGAGTACTATCTTCCCACCATTCCCATGGTTC 1226915
Query 32372 TGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
| | |||||||| || || || || || ||
Sbjct 1226916 TCATCAACGGTGCCGACGGTATTGGTACCGG 1226946
Score = 116 bits (128), Expect = 4e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || || || ||||| ||||| || | || |
Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||||| || || |||||||||||||| || || || |||||||||||||| ||
Sbjct 761657 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 761716
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
|| || || ||||| |||||||| | || ||||| | |||||
Sbjct 761717 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 761760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310150489200
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