Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 293 3e-74 seq6 185 1e-41 seq9 136 5e-27 >seq1 Length=6947394 Score = 293 bits (324), Expect = 3e-74 Identities = 699/1047 (67%), Gaps = 15/1047 (1%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| || || ||||| || |||| | | |||||||| ||| ||||||| Sbjct 1521879 CATGAAGGTGTCGGCAAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGA 1521938 Query 80775 -TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 | || |||||| || | ||||| |||| |||||| | || ||||| | Sbjct 1521939 GTTGCG-GGCCTCGGGGACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGG 1521997 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-----TC-A 80887 | || ||| || | || || || |||| |||||| | ||| || || | Sbjct 1521998 TGACGACCTTGGTGATCTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGA 1522057 Query 80888 CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAA 80947 |||| || || || | || || || ||||| ||||| ||||| || | | | Sbjct 1522058 CAAAGGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGT 1522117 Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| | ||| || ||||| | || || ||||| || |||||||||| | |||||| | Sbjct 1522118 ACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCG 1522177 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||||| |||| |||||||||||| |||| | ||| ||| ||||| ||| | || Sbjct 1522178 ACTTGCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCT 1522237 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 ||||||| | ||| | || | ||||||| |||||| ||||| ||| | Sbjct 1522238 CAAGGATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCT 1522297 Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 | ||||| |||| | || |||| | ||| | || | ||| | ||||||| Sbjct 1522298 CGTACTTCTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACT 1522357 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 || ||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||| | Sbjct 1522358 CGGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGG 1522417 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 |||||||||||||| ||| ||||| || ||| || ||||||| | || ||||| | Sbjct 1522418 GGATCCAGAGGGCGTAGAAGAGGTCACGAGCA-CGAACCTCCTCCTTGCCGTGGTTCTTG 1522476 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | ||||| ||||| | || ||| || ||||| ||||| || || | ||| | | Sbjct 1522477 CGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCA 1522536 Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || ||| ||| ||||||| ||||||||| ||||| |||| || |||| | | Sbjct 1522537 CCGGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGC 1522596 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 || |||| ||||| | || | |||||| ||||| | || ||| |||||||| || Sbjct 1522597 ATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGG 1522656 Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 | ||| ||| |||||||| || || | ||| || ||||| || || || Sbjct 1522657 ATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 1522716 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | ||| || || || || ||||| || | |||||| | | | ||| || ||| Sbjct 1522717 AGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGAC 1522776 Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 ||||| ||| | | || || ||||| || || || | ||||| |||| || || Sbjct 1522777 ATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGC 1522836 Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCGAT 81722 | ||||| |||| || || || |||| | || ||| | ||| ||||| |||||||| Sbjct 1522837 TCCGACATGAGGTTGTAAGTCTCAATGAC-CTTGTCAATGTTGTCGCCGTGGATACCGAT 1522895 Query 81723 AGCTACACGCATAAACATGTACTGGGG 81749 | || ||||| | ||||| |||||| Sbjct 1522896 CGACACGCGCATGATCATGTGCTGGGG 1522922 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 6690914 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 6690973 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||||| || || |||||||||||||| || || || ||||| Sbjct 6690974 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 6691033 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || || ||||| |||||||| | || ||||| | ||||| || Sbjct 6691034 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 6691093 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | || || || ||||| Sbjct 6691094 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 6691141 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||| | |||||| | ||||| || || ||||| ||||| |||||| Sbjct 1521163 ACAGTGAACTGAATGGCGTTGGCCGAAGGACGCGTGCGGAGGTAGTAGATGCCGGTCTTG 1521222 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || |||||||||||| | |||||| || |||||| || | | ||||| | Sbjct 1521223 AGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGCGAGAACGACGGGTTGGCG 1521282 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 | | |||||| || ||||| ||||| |||||| || ||||| || || || | ||| Sbjct 1521283 AGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCAGCAAGGTCA 1521342 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | | ||| || | ||| ||||| || || Sbjct 1521343 ATGACGGCCTTCTGCGAAATCTCCCAGACGGT 1521374 >seq6 Length=1958011 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || |||||||| ||||| Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 42063 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 42004 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | |||||||| | ||||| || Sbjct 42003 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAAC 41944 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||||||||| || Sbjct 41943 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGCGGAGG 41897 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || || |||||||||||||| || ||||| |||||| Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||||| || || || | ||||| || Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| | ||||| || || || Sbjct 41715 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGG 41669 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || || || ||||| ||||| || | ||||| || | ||| Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 42271 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| ||||| || |||||||||||||| || || || || Sbjct 42270 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 42211 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | |||||||| | ||||| || |||| ||||| ||||| ||| Sbjct 42210 AAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTT 42151 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | ||||| ||||| || Sbjct 42150 CACCTCGTCCTTCGTCTCCGCGGAGG 42125 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || || |||||||||||||| || ||||| |||||| Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||| | || || || | ||||| || Sbjct 41547 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 41488 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| || || || | || || || || || || Sbjct 41487 ATCCAGAAGGAGTCGACTCTCCACCTTGTTCTTCGACTCCGTGGCGGGCA 41438 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 64701 GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGG 64760 ||| ||||||| | ||||||| || |||||| || || || || ||||| || || Sbjct 63534 GTCTTCGTTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGG 63475 Query 64761 GTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTC 64820 || || || || |||||||| || ||||| ||||| ||||| ||||| | || || Sbjct 63474 CTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTC 63415 Query 64821 GAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||||||||| || || || |||||||| |||||| || ||||| Sbjct 63414 GAACGAGCTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGC 63370 >seq9 Length=1289175 Score = 136 bits (150), Expect = 5e-27 Identities = 302/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| || || ||||| || || || ||||||||||||||| ||||||||||| Sbjct 1226498 GATAACATTCGTTCCATCCCCTCGGTTGCCGACGGCCTCAAGCCTGGTCAGCGCAAGGTC 1226557 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 || | ||||||| || ||||| || || || ||||| || ||||| || Sbjct 1226558 ATGTTCGCCTGCTTCTTACGCAACCTCAAGAAGGAAATCAAGGTCGCCCAGCTCGGTGGT 1226617 Query 32074 TACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTC 32133 ||||| | ||| | || || || ||||||||||| || | | ||| ||||| Sbjct 1226618 TACGTTTCGGAGAAGACAGCATACCACCACGGCGAAGCCAGTTTGATGTCCACGATTGTT 1226677 Query 32134 AACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAG 32193 || || ||||||| |||||| || ||| | ||| | |||||||| || ||| Sbjct 1226678 GGTCTCGCCCAGAACTATGTCGGCAGCAACAACATCAACCTTCTCGAGCCCAACGGTCAG 1226737 Query 32194 TTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--C 32251 || || || || | ||||| |||||||| || ||| | ||||| || |||||| | Sbjct 1226738 TTCGGTACTCGCATGCAGGGTGGAAAGGATGCGGCCAGCCCTCGTTATATTTTCACCAAC 1226797 Query 32252 GTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACA 32311 ||| | | | | ||| |||| ||| ||| |||| | ||||| || | ||||| ||| Sbjct 1226798 GTCCCCCGCAT--GACCCGCACGATCTTCCACCCCGCCGACGACGCCATTCTCAACTACC 1226855 Query 32312 ATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCT 32371 | ||| || || ||| | ||||||| | || ||| ||| |||| ||| | Sbjct 1226856 TTAATGAAGATGGCCAGAAGATCGAGCCCGAGTACTATCTTCCCACCATTCCCATGGTTC 1226915 Query 32372 TGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | | |||||||| || || || || || || Sbjct 1226916 TCATCAACGGTGCCGACGGTATTGGTACCGG 1226946 Score = 116 bits (128), Expect = 4e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || || ||||| ||||| || | || | Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || |||||||||||||| || Sbjct 761657 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 761716 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| |||||||| | || ||||| | ||||| Sbjct 761717 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 761760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310150489200