Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq1 109 5e-19 >seq6 Length=1958011 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | ||||| || || || || |||| Sbjct 41668 CATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTC 41609 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | || || || || || ||||| || || || || ||||| || Sbjct 41608 CGACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || ||| | || | ||||| ||||| Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 41488 CATCCAGAAGGAGTCGAC 41471 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||||||| | || || || || || || |||| Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || || ||||| || Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || || | || | || || |||||| Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || | ||| |||| || ||||| Sbjct 41715 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGGCAT 41666 >seq1 Length=6947394 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || || || || | || Sbjct 6690915 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 6690974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 6690975 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6691034 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| |||| || |||||| Sbjct 6691035 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6691094 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | || |||| ||||| || Sbjct 6691095 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGGTAT 6691144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918209723200