Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
seq1 109 5e-19
>seq6
Length=1958011
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || || ||||||||| | ||||| || || || || ||||
Sbjct 41668 CATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTC 41609
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| |||| || | || || || || || ||||| || || || || ||||| ||
Sbjct 41608 CGACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| | || | ||||||||| || | || ||| | || | ||||| |||||
Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489
Query 27167 CATTCAAAAGGAGTCGAC 27184
||| || |||||||||||
Sbjct 41488 CATCCAGAAGGAGTCGAC 41471
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||| ||||||||||| | || || || || || || ||||
Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || || ||||| || || || || ||||| ||
Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || | || || | || | || || ||||||
Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||||||||| | || | || | ||| |||| || |||||
Sbjct 41715 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGCGTGGAGGCAT 41666
>seq1
Length=6947394
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| | || || || || || || | ||
Sbjct 6690915 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 6690974
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | ||||| || || || ||||| || ||||| || ||||| ||
Sbjct 6690975 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6691034
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || | || ||| | ||| |||| || ||||||
Sbjct 6691035 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6691094
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | || | || | || |||| ||||| ||
Sbjct 6691095 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGGTAT 6691144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918209723200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |