Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 >seq2 Length=4354190 Score = 122 bits (134), Expect = 8e-23 Identities = 235/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 |||| |||||||| |||| || ||| |||| | || ||||||| ||| | | Sbjct 191025 CCTTGGGGTTCCAAGCGCTCAACACAATCCGGCGATCCGTAGGGTTCTCCTTGATCTTCC 191084 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899 |||||| | ||| ||||||||| | || || || | |||||| | |||| | | | Sbjct 191085 GGATCACATCCTGGAGCTGGTCCACGCCTTGGCCGGTATAGTCGTCGTCGCACGTCTTGT 191144 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||| ||||| || || | ||||||||| ||||| || ||||||| ||||||||| || Sbjct 191145 ACTCGGCCCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGCGCC 191204 Query 6960 GAGATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || |||| ||| ||| || | || || ||||| |||||||||| | | Sbjct 191205 GGTGCCCGAGCCCCACGCG-GTCGAGGTACTCGCGGCTCCCGTTGCCGTCCCAGATGTGC 191263 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 || ||| || | ||| || | || |||| ||| || ||||||||||||||| Sbjct 191264 ACGCCCTTGGCGGCCAGCGCCGCGCCGTCCGTGTTGCCCGAGACAAACCACAGCAGCTCC 191323 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 || | ||||| | | | || || || || ||||| ||||| Sbjct 191324 TCAATGACGCCGCGCGTGAAGACGCGCTTGGTGGTCAGGAGCGG 191367 Score = 122 bits (134), Expect = 8e-23 Identities = 235/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| ||||| || || || || | | | ||||| | ||||||||||||||||| Sbjct 191367 CCGCTCCTGACCACCAAGCGCGTCTTCACGCGCGGCGTCATTGAGGAGCTGCTGTGGTTT 191308 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || ||| |||| || | || ||| | || ||| ||| | |||||||||| Sbjct 191307 GTCTCGGGCAACACGGACGGCGCGGCGCTGGCCGCCAAGGGCGTGCACATCTGGGACGGC 191248 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCGACTT 34401 ||||| || || | || ||| ||| |||| || ||| ||||||||| | Sbjct 191247 AACGGGAGCCGCGAGTACCTCGAC-CGCGTGGGGCTCGGGCACCGGCGCGAGGGCGACCT 191189 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGC 34461 |||||| || ||||| ||||||||| | || || ||||| ||||| | | |||| | Sbjct 191188 GGGCCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGGGCCGAGTACAAGACGTGCGACGA 191129 Query 34462 GGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAA 34521 |||||| | || || || | ||||||||| ||| | |||||| | | ||| ||| Sbjct 191128 CGACTATACCGGCCAAGGCGTGGACCAGCTCCAGGATGTGATCCGGAAGATCAAGGAGAA 191069 Query 34522 CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 |||| || | |||| ||| || |||| |||||||| |||| Sbjct 191068 CCCTACGGATCGCCGGATTGTGTTGAGCGCTTGGAACCCCAAGG 191025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262203885200