Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 190 5e-43 seq6 181 2e-40 seq9 129 1e-24 >seq1 Length=6947394 Score = 190 bits (210), Expect = 5e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| || |||| |||||| | || || Sbjct 6691126 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 6691067 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 6691066 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 6691007 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || |||||||| ||||| ||| Sbjct 6691006 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 6690947 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | ||||||||| Sbjct 6690946 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATTTT 6690912 >seq6 Length=1958011 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| ||||| ||||| || |||||||| || |||| || Sbjct 41671 TCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAG 41730 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| ||||| || ||||| || ||||| ||||| | Sbjct 41731 CGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGAT 41790 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| |||||||| ||||| ||||| || |||||||| Sbjct 41791 ACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTC 41850 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||||||||| || || | |||||| || || | |||||| Sbjct 41851 GAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| |||||||| |||||||| || |||||||| || || | |||||| Sbjct 41903 CGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTA 41962 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| ||||| || ||||| || |||| || Sbjct 41963 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCC 42022 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| ||||||||||| || || ||||| || Sbjct 42023 TCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGG 42082 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 42083 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || |||||||| ||||| ||||| || |||||||| || || | || || Sbjct 41446 ACGGAGTCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGT 41505 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || ||||| || ||||| ||||| | || Sbjct 41506 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACC 41565 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||| ||||| || || |||||||| Sbjct 41566 CTCCTTGTCCTGGATCTTGCTCTTAACGTTGTCGATCGTGTCGGACGACTCGACCTCGAG 41625 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || || ||||| ||||| | |||||| Sbjct 41626 CGTAATCGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 41667 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | ||||| | || || Sbjct 42140 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCC 42199 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || |||| || ||||||||| Sbjct 42200 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 42259 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || |||||||| ||||| ||| Sbjct 42260 TGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 42319 Query 211083 TTTCCCGTGAG 211093 || || ||||| Sbjct 42320 TTGCCGGTGAG 42330 >seq9 Length=1289175 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| |||||||| || || || ||| Sbjct 761760 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 761701 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || ||||| ||||| ||||| || Sbjct 761700 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAC 761641 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || |||||||| ||||| ||||| || ||||| ||||| || Sbjct 761640 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151480192775