Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 118 2e-21 seq1 114 3e-20 >seq6 Length=1958011 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || ||||| || ||||||||||| |||| | || | || || Sbjct 41911 GAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTC 41970 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | || || ||||| || Sbjct 41971 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 42030 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | | |||| || ||| || ||||| || || || Sbjct 42031 CTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGT 42090 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| |||||| Sbjct 42091 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || ||||| || ||||| ||||| || ||||||||||| |||| | || | Sbjct 41449 GAGTCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCG 41508 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||||||||| | | ||| || || Sbjct 41509 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTC 41568 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | |||| || ||| || || || || Sbjct 41569 CTTGTCCTGGATCTTGCTCTTAACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGT 41628 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||| || || |||||||| |||| |||||| Sbjct 41629 AATCGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 41667 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || ||||||||||| || | | || | ||||| Sbjct 41683 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATC 41742 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||| || || | ||||||||| | | ||| || ||||| || Sbjct 41743 CTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC 41802 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || || | || | |||| || ||| || || || || || || Sbjct 41803 CTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGT 41862 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 41863 CTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| || ||||||||||| |||| | || | || || Sbjct 42140 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCC 42199 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | || || ||||| || Sbjct 42200 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 42259 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| || ||| || || || || || || Sbjct 42260 TGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 42319 Query 152073 TTGCCCGTGAG 152083 ||||| ||||| Sbjct 42320 TTGCCGGTGAG 42330 >seq1 Length=6947394 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||||| || ||||||||||| || | | || | || || Sbjct 6691127 GAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 6691068 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 6691067 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 6691008 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | |||| || ||| || || || || || || Sbjct 6691007 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGT 6690948 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||||||| ||||| ||||||| ||||||||| Sbjct 6690947 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATTTT 6690912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820282583485