Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 1e-31
seq6 147 5e-30
seq9 120 7e-22
>seq1
Length=6947394
Score = 152 bits (168), Expect = 1e-31
Identities = 163/215 (76%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| || || ||||| || || || |||||||||||||| ||
Sbjct 6690912 AAAATGC---AGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAG 6690968
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||| ||||| |||||||| ||||| |||||||| || || ||||| ||
Sbjct 6690969 TCCTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCC 6691028
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|||||||| || || ||||||||||| || |||||||| || || | || ||| | ||
Sbjct 6691029 GACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGAC 6691088
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| ||| |||| || || || || || || |||||
Sbjct 6691089 TACAACATCCAGAAGGAGTCGACCCTCCACCTTGT 6691123
>seq6
Length=1958011
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| ||||| || || |||
Sbjct 42120 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGAC 42061
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || || || || ||||||||
Sbjct 42060 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 42001
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || ||| |||| || ||| ||
Sbjct 42000 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAACATC 41941
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 41940 CAGAAGGAGTCCACCCTTCACCTCGT 41915
Score = 132 bits (146), Expect = 1e-25
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
||||| || || || |||||||||||||| || ||| |||||||| || ||||||||
Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 42271
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
||||| |||||||| || || || || || |||||||| || || |||||||||||
Sbjct 42270 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 42211
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|| |||||||| || || | || || |||| || ||| |||| || || || || ||
Sbjct 42210 AAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTT 42151
Query 178122 CATCTTGT 178129
|| || ||
Sbjct 42150 CACCTCGT 42143
>seq9
Length=1289175
Score = 120 bits (132), Expect = 7e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || ||||| || || || |||||||||||||| || || ||||| |||||
Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| ||||| |||||||| || || ||||| || |||||||| || || |||
Sbjct 761657 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 761716
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
|||||||| || |||||||| || || | || ||| | || ||
Sbjct 761717 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 761760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730660201790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |