Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6955 161 1e-34 seq4646 89.7 6e-13 >seq6955 Length=16480 Score = 161 bits (178), Expect = 1e-34 Identities = 376/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| || || || ||||| |||||| || | |||||| || || ||||| Sbjct 7804 AACAGCAGACACGCAAAGTCAGTGTGCATACCCTCATCACGACTAATGAGCTCATTGGAG 7863 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || || ||||| || | |||||| ||||| || || |||||| Sbjct 7864 AAAGTCAGACCAGGCATCAGTCCCCGCTTCTTTAACCAAAAGATGGACGCAAACGATCCA 7923 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-- 33472 ||||||||||| || ||||| | ||||||||||| || | ||| | | || || Sbjct 7924 GAAAAGAAGATGCCCTCTACAGAAGCAAAGGCAACTAGCCGCTCCGCGAAGGTGGAGCGA 7983 Query 33473 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 ||| |||||| | |||||| || ||||| ||||| || || || ||||| Sbjct 7984 TGGTCGGATATCCAACGTAAAGCCCAGTCAGCCTTGAGTTTTATGCATGGTATTGTTTCG 8043 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 || |||| || || |||| | | | || || | || ||||| || | || Sbjct 8044 ATTGCATCGAAAAGGTAGTCTCTCCGGGAAGGTTCCTTGATGTAGGTATCAATGAGGAGG 8103 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| | || || || ||||| || || || ||||| ||||| || || | ||| Sbjct 8104 GAATATGTCTCAGAGTGGATGTTCTCCATCATGATTTGAAAGCCGTAAAAGCAACGTGCC 8163 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | || || ||| | ||||||| || ||| || ||||| || || |||||| Sbjct 8164 TCTGCGGCTTGCACCTCTTTCGAAAATCGCTCGACCAGGTTCTCATTGACAATGCCGTCA 8223 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---T 33768 || || ||||| || | || || || || | | ||| | | | || Sbjct 8224 GAAGCCGCGAAAAATGCGAGGACGTGAGAGATGAAGTGATGTTCATTTTCGTTAAGCTTG 8283 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 |||||||| || | ||| || | || || | |||||| | ||||| || || ||| Sbjct 8284 TTATTCCAGTCGTAGATGTCCATTTGTAAGTCCATTTCTTCAGCGGTCCAGAAAGAAGCC 8343 Query 33829 TCTGCCTTTTTATACATGTTCCAGAT 33854 || |||||||| ||||| | ||| || Sbjct 8344 TCAGCCTTTTTGTACATTTCCCATAT 8369 >seq4646 Length=10087 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| ||||||||||||| | | ||| |||| |||||| ||||| | ||||||||| Sbjct 4833 ATTCTTGCGAAGATCGAGGAACTCAAAAATGTCAGGATGCCAAGGTTCAAGGTATATGGC 4892 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | |||| || ||||| ||||| || ||||| | || | || ||| || ||| | Sbjct 4893 AAATGCTCCGGGACGTTTATTTCCACCTTGATCGACATAGCGCGCAGTGGCATCATATGC 4952 Query 63410 TCTCAACATTGGAATAATACCGTTTGA 63436 || | ||| ||||| ||||| || || Sbjct 4953 TCGGAGCATAGGAATGATACCATTAGA 4979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 229/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 63465 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 ||| | |||||||||||| ||| ||||| || || || ||| | || || | Sbjct 5059 CCAGTAGCACGAATATTATGAATGCTGAGACCAATACCACCGGCCGTCTTGCTAATCATG 5118 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 ||||| | || | ||||| ||||| || |||||| ||| || ||||| || || Sbjct 5119 GCGCAGCTCTTCAGGGTGTCGTAGATGCCTTCTATGGAATCGTCCTTCATGCAAACGAGG 5178 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 || || || | || || | || || || || |||||||| || || |||||| Sbjct 5179 AAGCAAGATGAGAGCTGAGGATGGGGTGTCCCAGCGTTGAATAAGGTCGGCGACGCGTGC 5238 Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT-- 63702 ||||| | ||||| | |||||||| ||||| | | ||| |||| |||| Sbjct 5239 GTAAAGTACCGCTCAGACATGAGATTGTATGTCTCGAGCACGCGGTCAATAT--CATTAC 5296 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 ||||| || || || |||||||||| ||| |||||||| | ||| | | | || Sbjct 5297 CATGAACGCCGACGGCTACACGCATTATCATATGCTGAGGACGCTCAGC-AACACGTCCA 5355 Query 63763 TTATTTTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 || || || ||| ||| ||||||||| ||||||||||| Sbjct 5356 TTGAGACGAAGAAGGTATGATCGTTCCAAAGTCTTAAAACCAAA 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622757177743480