Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6955 165 1e-35 seq4646 98.7 1e-15 >seq6955 Length=16480 Score = 165 bits (182), Expect = 1e-35 Identities = 377/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || ||| || || || ||| | |||||| || | |||||| | || ||||| Sbjct 7804 AACAGCAGACACGCAAAGTCAGTGTGCATACCCTCATCACGACTAATGAGCTCATTGGAG 7863 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || || ||||| || | |||||| ||||||||||| |||||| Sbjct 7864 AAAGTCAGACCAGGCATCAGTCCCCGCTTCTTTAACCAAAAGATGGACGCAAACGATCCA 7923 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-- 32829 |||||||| || || ||||| | |||||||||| || | ||| | | || || Sbjct 7924 GAAAAGAAGATGCCCTCTACAGAAGCAAAGGCAACTAGCCGCTCCGCGAAGGTGGAGCGA 7983 Query 32830 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 ||| |||||| | |||||| || ||||| ||||| || || ||||| || Sbjct 7984 TGGTCGGATATCCAACGTAAAGCCCAGTCAGCCTTGAGTTTTATGCATGGTATTGTTTCG 8043 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || |||| || || |||| | | | || || | || |||||||| | || Sbjct 8044 ATTGCATCGAAAAGGTAGTCTCTCCGGGAAGGTTCCTTGATGTAGGTATCAATGAGGAGG 8103 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||| | || || || ||||| || || |||||||| ||||| ||||| | ||| Sbjct 8104 GAATATGTCTCAGAGTGGATGTTCTCCATCATGATTTGAAAGCCGTAAAAGCAACGTGCC 8163 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | || || ||| | ||||||| || | | || ||||| || || |||||| Sbjct 8164 TCTGCGGCTTGCACCTCTTTCGAAAATCGCTCGACCAGGTTCTCATTGACAATGCCGTCA 8223 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---T 33125 || || ||||| || | || || || || | | ||| | | | || Sbjct 8224 GAAGCCGCGAAAAATGCGAGGACGTGAGAGATGAAGTGATGTTCATTTTCGTTAAGCTTG 8283 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 |||||||| || | ||| || | || |||| |||||| | ||||| || || ||| Sbjct 8284 TTATTCCAGTCGTAGATGTCCATTTGTAAGTCCATTTCTTCAGCGGTCCAGAAAGAAGCC 8343 Query 33186 TCTGCCTTTTTATACATATTCCAGAT 33211 || |||||||| ||||| | ||| || Sbjct 8344 TCAGCCTTTTTGTACATTTCCCATAT 8369 >seq4646 Length=10087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| ||||||||||||| | | ||| |||| |||||| ||||| | ||||||||| Sbjct 4833 ATTCTTGCGAAGATCGAGGAACTCAAAAATGTCAGGATGCCAAGGTTCAAGGTATATGGC 4892 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | |||| || ||||| ||||| || ||||| | || | || ||| || ||| | Sbjct 4893 AAATGCTCCGGGACGTTTATTTCCACCTTGATCGACATAGCGCGCAGTGGCATCATATGC 4952 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCC 63306 || | ||| ||||| |||||||| || ||| ||||| || || Sbjct 4953 TCGGAGCATAGGAATGATACCATTAGA-GTACCCATTCGTTCC 4994 Score = 86.0 bits (94), Expect = 8e-12 Identities = 228/344 (66%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||| | |||||||||||| ||| ||||| || || || ||| | || || | Sbjct 5059 CCAGTAGCACGAATATTATGAATGCTGAGACCAATACCACCGGCCGTCTTGCTAATCATG 5118 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| | || | || || |||||||| ||||| ||| ||| ||||| || || Sbjct 5119 GCGCAGCTCTTCAGGGTGTCGTAGATGCCTTCTATGGAATCGTCCTTCATGCAAACGAGG 5178 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || || | || || | || || || || |||||||| || || ||||| Sbjct 5179 AAGCAAGATGAGAGCTGAGGATGGGGTGTCCCAGCGTTGAATAAGGTCGGCGACGCGTGC 5238 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT-- 63557 ||||| | ||||| | |||||||| ||||| | | ||| |||| |||| Sbjct 5239 GTAAAGTACCGCTCAGACATGAGATTGTATGTCTCGAGCACGCGGTCAATAT--CATTAC 5296 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 ||||| || || || |||||||||| ||| |||||||| | ||| | | | || Sbjct 5297 CATGAACGCCGACGGCTACACGCATTATCATATGCTGAGGACGCTCAGC-AACACGTCCA 5355 Query 63618 TTATTTTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 || || || ||| ||| ||||||||| ||||||||||| Sbjct 5356 TTGAGACGAAGAAGGTATGATCGTTCCAAAGTCTTAAAACCAAA 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633438718478800