Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq582 113 4e-20 seq580 104 2e-17 >seq582 Length=4044 Score = 113 bits (124), Expect = 4e-20 Identities = 128/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTG 25092 ||||| |||| |||||||| |||||||||||||| || || ||| || ||| | Sbjct 4044 ATCACCCTCGAGGTGGAGTCTTCTGACACTATCGA--CAATGTCAAGGCCAAGATCCAAG 3987 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| || || ||||| |||||||||||||| | || |||||||| ||||| | |||| Sbjct 3986 ACAAGGAGGGCATTCCCCCTGACCAACAGCGCTTGATCTTTGCCGGGAAACAGCTGGAAG 3927 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| ||||| || |||||| || ||||| || || || || || ||| Sbjct 3926 ATGGCCGCACCCTGTCCGATTATAACATTCAGAAGGAGTCAACCCTCCAT 3877 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||| |||||||| ||| |||| || | || || |||||||| Sbjct 3802 AATGCAGATATTCGTCAAGACGTTGACCGGAAAAACCATTACCCTTGAGGTCGAGTCGTC 3743 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || || || | || || | ||| || || || || ||||| || || Sbjct 3742 TGACACCATTGA--CAATGTCAAGGCGAAGATTCA-GGATAAGGAGGGTATTCCTCCAGA 3686 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || ||||| | || |||| | ||| || ||| || Sbjct 3685 CCAGCAGCGTCTGATCTTCGCTGGGAAACAGCTTGAGGATGGCAGGACTTTGTCCGACTA 3626 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAG 25206 ||| ||||| || || || || || || |||| Sbjct 3625 CAACATTCAGAAGGAGTCAACTCTTCACTTAG 3594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | ||||| ||||| ||| Sbjct 3295 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACCATTACGTTGGAAGTCGAGTCCTCT 3236 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| || || || || |||||||| Sbjct 3235 GACACTATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 3176 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || ||| | || |||| ||| ||| | ||||| ||| Sbjct 3175 CAACGTCTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGTACTCTTTCAGATTATAAT 3116 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || || || || || || ||| Sbjct 3115 ATCCAGAAGGAGTCTACTCTTCAT 3092 >seq580 Length=8796 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || | || ||| | || || ||||| || Sbjct 8298 ATGCAAATCTTCGTCAAGACCCTGACGGGGAAGACTATTACACTGGAGGTCGAGTCATCG 8239 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || || | ||| ||||||||||| ||||| || ||||| Sbjct 8238 GACACCATTGACAACGTGAAAGCCAAGATTCAG-GACAAAGAAGGCATTCCTCCCGACCA 8180 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| |||||||| | || |||| || || | || ||||| Sbjct 8179 GCAGCGTCTCATTTTTGCTGGCAAACAGCTGGAGGATGGCCGAACACTCTCTGACTACAA 8120 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| ||||| || || Sbjct 8119 CATTCAGAAAGAGTCCACCCTTCA 8096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| | ||||| |||| |||||||| || Sbjct 8070 ATGCAAATCTTCGTCAAGACCCTTACTGGTAAGACGATCACCCTCGAGGTGGAGTCTTCG 8011 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | || || | || ||||| ||||| ||||| || || Sbjct 8010 GATACCATCGACAACGTCA---AGGCCAAGATACAG-GACAAGGAAGGTATTCCTCCCGA 7955 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || ||||||||||||| || || | ||||||| ||||| || ||||| Sbjct 7954 TCAGCAACGACTTATTTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACGTTGTCGGATTA 7895 Query 25175 CAATATTCAAAAAGA 25189 |||||| || || || Sbjct 7894 CAATATCCAGAAGGA 7880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433199123242445