Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq582 109 5e-19 seq580 109 5e-19 seq583 89.7 4e-13 >seq582 Length=4044 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| ||||| | || ||||| || || | | Sbjct 3801 ATGCAGATATTCGTCAAGACGTTGACCGGAAAAACCATTACCCTTGAGGTCGAGTCGTCT 3742 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| || |||||||||||||| || || || Sbjct 3741 GACACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 3682 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || |||||| | |||||| | | || | ||||| |||||| Sbjct 3681 CAGCGTCTGATCTTCGCTGGGAAACAGCTTGAGGATGGCAGGACTTTGTCCGACTACAAC 3622 Query 22399 ATTCAAAAAGAATCCACCATACATTTAG 22426 ||||| || || || || | || |||| Sbjct 3621 ATTCAGAAGGAGTCAACTCTTCACTTAG 3594 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || | || | || || || || || Sbjct 3523 ATGCAGATTTTTGTCAAGACGTTGACTGGGAAGACTATTACGTTAGAGGTTGAGTCCTCC 3464 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||||||||| || || || || ||||| Sbjct 3463 GACACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAAGGGATCCCGCCGGATCAG 3404 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | || ||| ||||| |||| || || ||| Sbjct 3403 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACGCTCTCTGACTATAAC 3344 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || || | ||| | ||| | || | ||||| ||| Sbjct 3343 ATTCAGAAAGAGTCGACGCTGCATCTGGTTCTCCGTCTTCGCGGTGGT 3296 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || ||||| | | || || | ||| || |||| || || ||||||| Sbjct 4043 TCACCCTCGAGGTGGAGTCTTCTGACACTATCGACAATGTCAAGGCCAAGATCCAAGACA 3984 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 ||||||| ||||| || || ||||| || | || |||||||| |||||| | || ||| Sbjct 3983 AGGAGGGCATTCCCCCTGACCAACAGCGCTTGATCTTTGCCGGGAAACAGCTGGAAGATG 3924 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||||| | |||||||| |||||||| || || || ||| | ||| Sbjct 3923 GCCGCACCCTGTCCGATTATAACATTCAGAAGGAGTCAACCCTCCAT 3877 >seq580 Length=8796 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || || || || | | Sbjct 8298 ATGCAAATCTTCGTCAAGACCCTGACGGGGAAGACTATTACACTGGAGGTCGAGTCATCG 8239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| || ||||| ||||| || || ||||| ||||| || Sbjct 8238 GACACCATTGACAACGTGAAAGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 8179 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||||||| | |||||| ||| || |||| || |||||| Sbjct 8178 CAGCGTCTCATTTTTGCTGGCAAACAGCTGGAGGATGGCCGAACACTCTCTGACTACAAC 8119 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| ||||| |||||| Sbjct 8118 ATTCAGAAAGAGTCCACC 8101 >seq583 Length=22390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || ||||| |||||||| || || || |||||||| ||| | ||||| |||||| Sbjct 203 ATCCCGCCCGACCAACAACGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACT 144 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 |||| ||||||||||| || || || || ||| | ||| | || ||||| |||| ||| Sbjct 143 CTCTCTGATTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTTGCGTCTGCGTGGA 84 Query 22444 GG 22445 || Sbjct 83 GG 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419603168039695