Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq582 114 1e-20 seq580 114 1e-20 seq4313 84.2 2e-11 >seq582 Length=4044 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114175 CTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAA 114234 |||| || | || || || || ||||||||||| ||| || ||| | ||| |||| Sbjct 3594 CTAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTCCTGCCATCCTCAA 3653 Query 114235 GTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAA 114294 | ||||| |||||| |||| |||||||| ||||| |||||||| || || || || || Sbjct 3654 GCTGTTTCCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGAA 3713 Query 114295 TCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGC 114354 |||| || | | |||| |||||| | || ||||| || | ||| | ||||| | Sbjct 3714 TCTTCGCCTTGACATTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTAATGGTTTTTC 3773 Query 114355 CGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || || || || |||||||| Sbjct 3774 CGGTCAACGTCTTGACGAATATCTGCAT 3801 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | ||| | ||| || ||||| |||||||| || || Sbjct 3294 ATACCACCGCGAAGACGGAGAACCAGATGCAGCGTCGACTCTTTCTGAATGTTATAGTCA 3353 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| || || || ||||| |||||||||| || || ||||| Sbjct 3354 GAGAGCGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCCGGC 3413 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | |||| ||||||| ||| || Sbjct 3414 GGGATCCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTATCAATAGTGTCGGAGGACTCA 3473 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| || || |||||||||||||| Sbjct 3474 ACCTCTAACGTAATAGTCTTCCCAGTCAACGTCTTGACAAAAATCTGCAT 3523 >seq580 Length=8796 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || ||||| ||||||||||| || Sbjct 8069 ATACCACCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCA 8128 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || ||||| ||||| | ||||||||||| ||||| ||| Sbjct 8129 GAGAGTGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAAAATGAGACGCTGCTGGTCGGGA 8188 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| |||||| ||| | | |||| |||||| | || ||| Sbjct 8189 GGAATGCCTTCTTTGTCCTGAATCTTGGCTTTCACGTTGTCAATGGTGTCCGATGACTCG 8248 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || || || ||||| || || || || || |||||| Sbjct 8249 ACCTCCAGTGTAATAGTCTTCCCCGTCAGGGTCTTGACGAAGATTTGCATG 8299 >seq4313 Length=23148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || || ||||| || |||||||| ||||||| ||||| ||| || Sbjct 10878 ACTAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCG 10819 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279 ||||| || || || ||||||||||||| ||||| || ||||||| Sbjct 10818 AGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGC 10773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420009447171636