Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq582 105 4e-17 seq580 105 4e-17 seq3333 102 5e-16 seq611 87.8 1e-11 >seq582 Length=4044 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || ||||| || || ||||| || ||||| |||| || || Sbjct 3303 CGAAGACGGAGAACCAGATGCAGCGTCGACTCTTTCTGAATGTTATAGTCAGAGAGCGTG 3362 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| |||||||| || |||||||| ||||| || || || ||| Sbjct 3363 CGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCCGGCGGGATCCCT 3422 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||||||||| || || |||||||| || | | | || | Sbjct 3423 TCCTTGTCTTGAATCTTCGCCTTCACGTTATCAATAGTGTCGGAGGACTCAACCTCTAAC 3482 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | ||||| || ||||| || Sbjct 3483 GTAATAGTCTTCCCAGTCAACGTCTTGACAAAAATCTG 3520 Score = 89.7 bits (98), Expect = 3e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 480608 AGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 ||| ||| ||| ||||| || || ||||| || || ||||| || || || |||||||| Sbjct 3637 AGTCCTGCCATCCTCAAGCTGTTTCCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAAT 3696 Query 480668 TCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTT 480726 || ||||| || |||||||| |||||| ||||| || |||| | | | | Sbjct 3697 ACCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGACGACTCGACCT- 3755 Query 480727 CAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||||| ||||| ||||| | ||||| ||||| || || Sbjct 3756 CAAGGGTAATGGTTTTTCCGGTCAACGTCTTGACGAATATCTG 3798 Score = 86.0 bits (94), Expect = 4e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 480567 AGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGT 480626 |||||||| ||| || || | ||||||||| | ||||| | ||| || ||| Sbjct 3090 AGATGAAGAGTAGACTCCTTCTGGATATTATAATCTGAAAGAGTACGACCATCCTCCAGT 3149 Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 |||||||| || || || |||||||| || ||||| || || || |||||||| || ||| Sbjct 3150 TGCTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATC 3209 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||||| |||||||| |||| | | | || ||| ||||| || || || Sbjct 3210 TTCGCCTTGACGTTGTCAATAGTGTCAGAGGACTCGACTTCCAA-CGTAATGGTCTTGCC 3268 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || || || Sbjct 3269 CGTCAGCGTCTTCACAAAGATCTG 3292 >seq580 Length=8796 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||| ||||| || ||||| || || || |||| || || Sbjct 8077 ACGGAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGAGAGTGT 8136 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| || || || || ||||||||||| ||||| || || || |||||||| || Sbjct 8137 TCGGCCATCCTCCAGCTGTTTGCCAGCAAAAATGAGACGCTGCTGGTCGGGAGGAATGCC 8196 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||| ||||| |||||||| ||| || ||||| || || | || | | || | Sbjct 8197 TTCTTTGTCCTGAATCTTGGCTTTCACGTTGTCAATGGTGTCCGATGACTCGA-CCTCCA 8255 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||| || || || || ||||| ||||| ||||| Sbjct 8256 GTGTAATAGTCTTCCCCGTCAGGGTCTTGACGAAGATTTG 8295 Score = 100 bits (110), Expect = 2e-15 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 480569 ATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTG 480628 |||||| ||||| || || | ||| ||||| | | || | | |||||| || || Sbjct 7867 ATGAAGGGTACTCTCCTTCTGGATATTGTAATCCGACAACGTGCGGCCATCTTCCAGCTG 7926 Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 7927 CTTCCCGGCAAAAATAAGTCGTTGCTGATCGGGAGGAATACCTTCCTTGTCCTGTATCTT 7986 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||||| || || ||||| | | | | || ||||| || || ||||| | Sbjct 7987 GGCCTTGACGTTGTCGATGGTATCCGAAGACTCCA-CCTCGAGGGTGATCGTCTTACCAG 8045 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| ||||| Sbjct 8046 TAAGGGTCTTGACGAAGATTTG 8067 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| || ||||| || |||||| || | | ||| Sbjct 8584 ACGGAGACGGAGGACAAGGTGAAGAGTGGACTCTTTCTGAATATTATAGTCGGACAAAGT 8643 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 | | ||| || || |||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 8644 GCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGTCGTTGCTGATCAGGGGGAAT 8700 >seq3333 Length=34899 Score = 102 bits (112), Expect = 5e-16 Identities = 162/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 474656 TCACCGGAACAAATTTCTTCAATGGT--TTTAGCCAAAATGAAACAAACCGC-GAGCTCA 474712 || || ||| |||||||||| ||||| ||| | || ||||| |||| || ||| || Sbjct 9137 TCCCCTGAAGAAATTTCTTCCATGGTCCTTTTG--AAGATGAAGGAAACAGCAGAG-TCC 9081 Query 474713 TATCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771 ||||| || || | | ||| | || || | || ||||| ||||| || |||||||| Sbjct 9080 TATCTCGGTACTACCATCAACA-ACGCCGTTGTAACCGTTCCTGCATACTTCAATGATTC 9022 Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831 |||||| || || || || || || |||| ||| | || | || || | ||||| || Sbjct 9021 TCAACGACAGGCTACCAAGGACGCTGGAACCATTTCTGGCATGAACGTCCTCCGTATCAT 8962 Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||| || || || |||| ||||||||||| ||||| Sbjct 8961 CAACGAGCCAACGGCTGCTGCTATTGCCTATGGTCTTGACAAGAA 8917 >seq611 Length=79020 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 |||||| |||||||||||||| | || || || || || ||| ||||||| || Sbjct 261 ATCCAAGTCTTTGAAGGTGAACGTTCCTTGACCAAGGACAACAACCTTCTTGGAAAGTTC 320 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || | || |||||||| || | || |||||||| ||||| || || ||||| Sbjct 321 GAGCTGTCCAGCATCCCTCCTGCACCTCGTGGTGTTCCTCAGATTGAGGTCACATTTGAG 380 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||| |||||||| | || ||| ||||| ||||| Sbjct 381 ATTGATGCCAATGGTATCATGAAAGTTGCTGCTGCAGATAA 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267132436926644