Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6955 190 3e-42 seq4584 178 2e-38 seq4583 107 3e-17 seq6019 104 3e-16 >seq6955 Length=16480 Score = 190 bits (210), Expect = 3e-42 Identities = 355/507 (70%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 |||||||||||||||| |||||||| ||||| || || |||||||| || || | ||| Sbjct 8370 GATATGGGAAATGTAC-AAAAAGGCTGAGGCTTCTTTCTGGACCGCTGAAGAAATGGACT 8312 Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | |||| | ||||| | | ||| | ||| | || | || |||||| Sbjct 8311 TACAAATGGACATCTACGACTGGAATAACAAGCTTAACGAAAATGAACATCACTTCATCT 8252 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| ||||| ||| || || ||||| || |||||||||| || Sbjct 8251 CTCACGTCCTCGCATTTTT-CGCGGCTTCTGACGGCATTGTCAATGAGAACCTGGTCGAG 8193 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || ||| ||||||||| ||| |||||||||||| |||||||| || || ||| Sbjct 8192 CGATTTTCGAAAGAGGTGCAAGCCGCAGAGGCACGTTGCTTTTACGGCTTTCAAATCATG 8133 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| || || || ||||| || || |||||| ||||||| || Sbjct 8132 ATGGAGAACATCCACTCTGAGACATATTCCCTCCTCATTGATACCTACATCAAGGAACCT 8073 Query 1456072 GTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || ||| |||| ||||| || ||||| || | || | | | ||||| Sbjct 8072 TCCCGGAGAGACTACCT-TTTCGATGCAATCGAAACAATACCATGCATAAAACTCAAGGC 8014 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||||| | | | | ||| || ||| || |||||||| || Sbjct 8013 TGACTGGGCTTTACGTTGGATATCCGACCATCG-CTCCAC-CTTCGCGGAGCGGCTAGTT 7956 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCT 1456248 | |||||| | || ||||||||||| || || || | | |||| ||||||||||| | Sbjct 7955 GCCTTTGCTTCTGTAGAGGGCATCTTCTTTTCTGG-ATCGTTTGCGTCCATCTTTTGGTT 7897 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| || || ||||| ||||| Sbjct 7896 AAAGAAGCGGGGACTGATGCCTGGTCT 7870 >seq4584 Length=6343 Score = 178 bits (196), Expect = 2e-38 Identities = 289/408 (71%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||| | ||||| ||||| ||| || || |||||||||||| || || || ||||| Sbjct 3278 GACAATGAGCGTCATTTTATCTCTCATGTTCTCGCCTTTTTT-GCTGCTTCTGACGGCAT 3336 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||||||| | || || || |||||| || || | | || || |||| Sbjct 3337 CGTTAACGAGAACCTCGTCGAACGTTTCTCGAAAGAAGTTCAGGTTGCTGAAGCTCGTTG 3396 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || || || ||||||||| || || || || || || || ||||| || ||||| || Sbjct 3397 CTTCTATGGTTTCCAGATCATGATGGAGAATATTCATTCCGAGACCTATTCTCTCCTTAT 3456 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 |||||| ||| |||| ||||| | | ||| ||| | || ||| |||||||| || | Sbjct 3457 CGACACATACATCAAAGACCCCGCCCAGAGGGAATATCTTTTTGATGCCATCGAGACCAT 3516 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | | | || || |||||||| | | |||||| | | || | || | Sbjct 3517 TCCTTGCATCAAACGCAAAGCTGACTGGGCCCTTCACTGGATCTCCGATGAACGT-TCCA 3575 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 | |||||||||||| ||||| | ||||||||| || || ||||| || ||||| ||| | Sbjct 3576 C-CTTTGCCGAGCGTCTCGTAGCCTTTGCCGCCGTTGAAGGCATTTTCTTCTCTGGCTCT 3634 Query 1456229 TTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||| ||||||||||| | |||||||| ||| | ||||| ||||| Sbjct 3635 TT-TGCTTCCATCTTTTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCT 3681 >seq4583 Length=9780 Score = 107 bits (118), Expect = 3e-17 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||||| ||||||||| ||| |||||||||||| |||||||| ||| |||||||| || | Sbjct 7346 CTCATTGGCATGAACTCCAA-GCTCATGTGCCAATACATTGAGTTT-GTCGCCGATCGTC 7403 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || || ||| || | ||| ||| | | ||||| ||| | ||| Sbjct 7404 TGCTTGTAGCCCTTGGCAACG-ACAAGGTGTACAACTCAACGAACCCCTTCGACTTCATG 7462 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761 || ||||||||||| |||||||||| ||||| |||||| |||||| | || ||| | Sbjct 7463 GACATGATCTCGCTCCAGGGCAAGACTAACTTCTTCGAGAAGCGCGTGTCAGATTACTCA 7522 Query 1456762 AAGGC 1456766 ||||| Sbjct 7523 AAGGC 7527 >seq6019 Length=9942 Score = 104 bits (114), Expect = 3e-16 Identities = 137/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||||| ||||||||| ||| |||||||||||| |||||||| ||| || ||||| || | Sbjct 2376 CTCATTGGCATGAACTCCAA-GCTCATGTGCCAATACATTGAGTTT-GTTGCCGATCGTC 2433 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || || ||| || | ||| ||| | | ||||| ||| | ||| Sbjct 2434 TGCTTGTCGCCCTTGGCAACG-ACAAGGTGTACAACTCAACGAACCCCTTCGACTTCATG 2492 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761 || ||||||||||| |||||||||| ||||| |||||| |||||| | || ||| | Sbjct 2493 GACATGATCTCGCTCCAGGGCAAGACTAACTTCTTCGAGAAGCGCGTGTCAGATTACTCA 2552 Query 1456762 AAGGC 1456766 ||||| Sbjct 2553 AAGGC 2557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175457485797286