Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6955 179 5e-40 seq4646 123 3e-23 >seq6955 Length=16480 Score = 179 bits (198), Expect = 5e-40 Identities = 377/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || |||||| || | |||||||| | |||||| | || || || || || || Sbjct 7813 CACGCAAAGTCAGTGTGCATACCCTCATCACGACTAATGAGCTCATTGGAGAAAGTCAGA 7872 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| || || ||||| || | |||||| |||| ||||| ||||||||||||||| Sbjct 7873 CCAGGCATCAGTCCCCGCTTCTTTAACCAAAAGATGGACGCAAACGATCCAGAAAAGAAG 7932 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC-ATTAT---G 39792 ||||| ||||| | ||||| ||||| || | ||| || || || | | || | Sbjct 7933 ATGCCCTCTACAGAAGCAAAGGCAACTAGCCGCTCCGCG-AAGGTGGAGCGATGGTCGGA 7991 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| ||||| ||||| || |||| || || |||||||| || |||| Sbjct 7992 TATCCAACGTAAAGCCCAGTCAGCCTTGAGTTTTATGCATGGTATTGTTTCGATTGCATC 8051 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || || || | | | | || || | || ||||| || | || ||| | Sbjct 8052 GAAAAGGTAGTCTCTCCGGGAAGGTTCCTTGATGTAGGTATCAATGAGGAGGGAATATGT 8111 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| || ||| || ||||| |||||||| || | ||| || | Sbjct 8112 CTCAGAGTGGATGTTCTCCATCATGATTTGAAAGCCGTAAAAGCAACGTGCCTCTGCGGC 8171 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| |||||| |||||| || ||| || ||||| || || || ||| ||| || Sbjct 8172 TTGCACCTCTTTCGAAAATCGCTCGACCAGGTTCTCATTGACAATGCCGTCAGAAGCCGC 8231 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCA---TCGGGTGTCAATTTATTCCA 40089 |||||||| | || || || || | | |||| ||| | |||||||| Sbjct 8232 GAAAAATGCGAGGACGTGAGAGATGAAGTGATGTTCATTTTCGTTAAGCTTGTTATTCCA 8291 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| | ||| || || || || | ||||||||| ||||| || || ||||| ||||| Sbjct 8292 GTCGTAGATGTCCATTTGTAAGTCCATTTCTTCAGCGGTCCAGAAAGAAGCCTCAGCCTT 8351 Query 40150 TTTGTACATGTTCCATAT 40167 ||||||||| | |||||| Sbjct 8352 TTTGTACATTTCCCATAT 8369 >seq4646 Length=10087 Score = 123 bits (136), Expect = 3e-23 Identities = 173/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 69602 TCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||| ||| || || | |||||| || || || ||| ||||| | | | | ||||| Sbjct 4767 TCACAAA-AGGTCAGAAATCCATAGGGCGTAGAAA-AGATCGCGTGCACGGCTCTCTTCC 4824 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || ||| || ||||||||| ||||| | ||| |||| |||||| ||||| || Sbjct 4825 TTGCCGTGATTCTTGCGAAGATCGAGGAACTCAAAAATGTCAGGATGCCAAGGTTCAAGG 4884 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| || ||||||||||| || ||||| | || | |||||| | Sbjct 4885 TATATGGCAAATGCTCCGGGACGTTTATTTCCACCTTGATCGACATAGCGCGCAGTGGCA 4944 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 | ||| ||| ||||| ||||| ||||||||||| | ||||| ||||||| ||| || Sbjct 4945 TCATATGCTCGGAGCATAGGAATGATACCATTAGAGTACCCATTCGTTCCAGCAATGTA 5003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686699267056920