Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6019 89.7 6e-13 seq4584 89.7 6e-13 seq4583 89.7 6e-13 seq3112 86.0 7e-12 >seq6019 Length=9942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||||||||| || | || || || ||||| || || ||||||||||| || | Sbjct 2044 CCTTTGCTGAGCGTCTTGTAGCCTTCGCCGCCGTTGAAGGCATTTTCTTCTCTGGCTCGT 2103 Query 94856 TCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | |||| | |||||||| || | ||||| |||||| ||||| ||| Sbjct 2104 T-TGCTTCCATCTTTTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTCACGTTCTCAAAC 2162 Query 94915 GAGCTTATCTCTCGTGACGAggg 94937 ||||| ||| ||||||||||| Sbjct 2163 GAGCTCATCAGCCGTGACGAGGG 2185 >seq4584 Length=6343 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||||| ||| | || ||||| ||||| || || ||||||||||| | || Sbjct 3576 CCTTTGCCGAGCGTCTCGTAGCCTTTGCCGCCGTTGAAGGCATTTTCTTCTCTGGCT-CT 3634 Query 94856 TCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | |||| | |||||||| || | ||||| |||||| ||||| ||| Sbjct 3635 TTTGCTTCCATCTTTTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTCACGTTCTCAAAC 3694 Query 94915 GAGCTTATCTCTCGTGACGAggg 94937 ||||| ||| ||||| ||||| Sbjct 3695 GAGCTCATCAGCCGTGATGAGGG 3717 >seq4583 Length=9780 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||||||||| || | || || || ||||| || || ||||||||||| || | Sbjct 7014 CCTTTGCTGAGCGTCTTGTAGCCTTCGCCGCCGTTGAAGGCATTTTCTTCTCTGGCTCGT 7073 Query 94856 TCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | |||| | |||||||| || | ||||| |||||| ||||| ||| Sbjct 7074 T-TGCTTCCATCTTTTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTCACGTTCTCAAAC 7132 Query 94915 GAGCTTATCTCTCGTGACGAggg 94937 ||||| ||| ||||||||||| Sbjct 7133 GAGCTCATCAGCCGTGACGAGGG 7155 >seq3112 Length=18921 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/317 (66%), Gaps = 10/317 (3%) Strand=Plus/Plus Query 169201 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 169260 ||| ||||| ||||| || | |||||||| | | |||||||| || || || || Sbjct 3577 ATCGGTCATAATCATAAGTTGGCCATACCGTAACGACGAAACATCCTGGTACTCTTTGTT 3636 Query 169261 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT-----TGATGTGAGC 169315 || || | ||||| |||||||||| | | || ||| | ||| |||| || | Sbjct 3637 GTGCTGCAACCCCAAAATCTTCTTGATGTTCTGGATCTCCTCGTTCTTCATGATTTGGTC 3696 Query 169316 TGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAG 169375 ||| | || |||||||||||| | || |||||||||||||| | |||| || Sbjct 3697 -GTGCTTC----GCCTCGCGAACATTCAAAACTTTACCACGAAGAGGGAATATACCGAAG 3751 Query 169376 TGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCG 169435 | | ||| |||||||| ||||| || || | ||| || || || || || || Sbjct 3752 TTGTTACGTCCAACGACACTAAGACCAGCCTGGGCCATAGTTTTGGCTGAATCTCCTTCC 3811 Query 169436 GTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAAT 169495 || | ||| || || || ||| | | | || || ||| ||||||| ||| | | Sbjct 3812 GTCAAGATAAGGGTGCAGTTTTTGGCATTTTTGGTGCCAGCCATGTTCGCGTCAGATAGT 3871 Query 169496 TTGGGAATACCAGTAAT 169512 || || | ||| ||||| Sbjct 3872 TTAGGCAGACCTGTAAT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583082883583720