Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armillaria_20fuscipes_20[genbank_20GCA_5F001679825.1_202016-07-05] 24,403 sequences; 52,984,320 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq580 185 1e-41 seq582 174 2e-38 seq4313 104 3e-17 seq583 98.7 1e-15 seq6955 95.1 1e-14 >seq580 Length=8796 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||||||||| || ||||| |||||| Sbjct 8298 ATGCAAATCTTCGTCAAGACCCTGACGGGGAAGACTATTACACTGGAGGTCGAGTCATCG 8239 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || ||||||||||| || || |||||||| |||||| Sbjct 8238 GACACCATTGACAACGTGAAAGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 8179 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| || || || ||||||| || || || | ||||| || Sbjct 8178 CAGCGTCTCATTTTTGCTGGCAAACAGCTGGAGGATGGCCGAACACTCTCTGACTACAAC 8119 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||||| ||||| || ||| | ||||| || ||||| Sbjct 8118 ATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTCCGTGGTGG 8072 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| ||||| || ||||| || || || ||||| ||||| Sbjct 8070 ATGCAAATCTTCGTCAAGACCCTTACTGGTAAGACGATCACCCTCGAGGTGGAGTCTTCG 8011 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 8010 GATACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGTATTCCTCCCGATCAG 7951 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || |||||||| || ||||| || || |||| || || | | || || ||| Sbjct 7950 CAACGACTTATTTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACGTTGTCGGATTACAAT 7891 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| ||||| || |||||| Sbjct 7890 ATCCAGAAGGAGAGTACCCTTCAT 7867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || || ||||| || || || |||||||| ||||| |||||||||| || || Sbjct 8700 ATTCCCCCTGATCAGCAACGACTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACT 8641 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | ||||||||| | || || || ||||||||||| || ||| | ||||| || ||| Sbjct 8640 TTGTCCGACTATAATATTCAGAAAGAGTCCACTCTTCACCTTGTCCTCCGTCTCCGTGGT 8581 Query 27631 GG 27632 || Sbjct 8580 GG 8579 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| ||||| || ||||||||||| ||||| Sbjct 8577 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATAACTCTTGAGGTGGAGTCTTCG 8518 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| || | ||||| || || || ||||||||||| Sbjct 8517 GATACTATTGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGG 8474 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||| ||||| || ||||| || || ||||| | || |||| |||||| Sbjct 8421 ATTCCCCCCGACCAACAGCGCCTCATTTTCGCAGGCAAGCAGTTGGAAGATGGTCGTACT 8362 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || || || ||||||||||| || ||| | ||||| || ||| Sbjct 8361 CTCTCCGACTACAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTTCGTCTCCGTGGT 8302 Query 27631 GG 27632 || Sbjct 8301 GG 8300 >seq582 Length=4044 Score = 174 bits (192), Expect = 2e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| ||||| | || || ||||| | Sbjct 3295 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACCATTACGTTGGAAGTCGAGTCCTCT 3236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || |||||||||||||| || || || |||||| Sbjct 3235 GACACTATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 3176 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || |||||||| ||||||| |||||| || |||| |||||| Sbjct 3175 CAACGTCTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGTACTCTTTCAGATTATAAT 3116 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 3115 ATCCAGAAGGAGTCTACTCTTCATCT 3090 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||| | || || ||||||||||| | ||||||||||| Sbjct 3523 ATGCAGATTTTTGTCAAGACGTTGACTGGGAAGACTATTACGTTAGAGGTTGAGTCCTCC 3464 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || ||||| |||||||| || || || || || ||| Sbjct 3463 GACACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAAGGGATCCCGCCGGATCAG 3404 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| ||||| ||||| |||| ||| || || | |||||||| Sbjct 3403 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACGCTCTCTGACTATAAC 3344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || ||||| || | |||||||||||||| Sbjct 3343 ATTCAGAAAGAGTCGACGCTGCATCTGGTTCTCCGTCTTCGCGGTGG 3297 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 3802 AATGCAGATATTCGTCAAGACGTTGACCGGAAAAACCATTACCCTTGAGGTCGAGTCGTC 3743 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || |||||||| |||||||| |||||||||||||| Sbjct 3742 TGACACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCA 3683 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| || || || ||||||| | || | | ||||| || Sbjct 3682 GCAGCGTCTGATCTTCGCTGGGAAACAGCTTGAGGATGGCAGGACTTTGTCCGACTACAA 3623 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | || ||||| || |||||||| Sbjct 3622 CATTCAGAAGGAGTCAACTCTTCA 3599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || || ||||| ||||| ||| | || | ||| | ||||| || || || ||| Sbjct 4044 ATCACCCTCGAGGTGGAGTCTTCTGACACTATCGACAATGTCAAGGCCAAGATCCAAGAC 3985 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| ||||| || ||||| ||||| | || ||||| || || || || || ||| Sbjct 3984 AAGGAGGGCATTCCCCCTGACCAACAGCGCTTGATCTTTGCCGGGAAACAGCTGGAAGAT 3925 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| | || ||||| | || ||||| || || || ||||| Sbjct 3924 GGCCGCACCCTGTCCGATTATAACATTCAGAAGGAGTCAACCCTCCATCT 3875 >seq4313 Length=23148 Score = 104 bits (114), Expect = 3e-17 Identities = 88/106 (83%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| ||||||||||||||||| || ||||| || |||||||||||||||| |||||| Sbjct 10775 ATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGCCGTACC 10834 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || ||| ||||| || |||| || || || |||||||| ||||| Sbjct 10835 CTGAGC-GACTACAACATCCAGAAAGAGTCGACTCTTCACTTAGTC 10879 >seq583 Length=22390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 361 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGTCCTCT 302 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||| | ||| | ||||| || || || || |||||||| Sbjct 301 GATACCATCGACAATGTAAAGGCCAAGATCCAAGATAAGGAGGG 258 >seq6955 Length=16480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 |||| || | || ||||| | ||| || || || ||||||||||| || || || | Sbjct 7966 AGCGGCTAGTTGCCTTTGCTTCTGTAGAGGGCATCTTCTTTTCTGGATCGTTTGCGTCCA 7907 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | || ||| |||| |||||||| |||||||| |||||| | || || || ||||| || Sbjct 7906 TCTTTTGGTTAAAGAAGCGGGGACTGATGCCTGGTCTGACTTTCTCCAATGAGCTCATTA 7847 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA 64889 ||| || ||||| | ||| || |||||| | |||||||| ||||| || Sbjct 7846 GTCGTGATGAGGGTATGCACACTGACTTTGCGTGTCTGCTGTTCAGTCACCTGAA 7792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570136433941360