Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2640 134 1e-26 seq1717 113 5e-20 >seq2640 Length=24278 Score = 134 bits (148), Expect = 1e-26 Identities = 279/413 (68%), Gaps = 8/413 (2%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 || || || | ||||||||||||||| || || || | |||||||| || || || Sbjct 17588 CCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGACCGGGCATAAGACCACGCTTT 17529 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || || ||||| || ||||| ||||| |||||||| || | || || Sbjct 17528 TTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 17469 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | || || ||||| | || | | |||| |||||| ||| | |||| ||| Sbjct 17468 GCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTCGGAAATCCACTTCAGTGCCCAATCG 17409 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT----TTCTCTTTTTC 17220 || || |||| ||||| || || || | || | || | | | | || Sbjct 17408 GCCTTACGCTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGG-- 17351 Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 | | |||| || || |||||||||||||| ||| | || ||||| |||||||| Sbjct 17350 CGG--GGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTC 17293 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA 17340 ||| ||||| || ||||| ||||| || || |||||| ||||||||| | |||| Sbjct 17292 CATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTGCTTGAACTTCGTTGGAGAA 17233 Query 17341 TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 || || | || || || || ||||| ||||| || ||||| || |||| Sbjct 17232 ACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGCAGCGAAGAAAGCCA 17180 >seq1717 Length=72410 Score = 113 bits (124), Expect = 5e-20 Identities = 262/393 (67%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 ||||| || | |||||| || ||||| || || || | || ||||| || || ||| Sbjct 62865 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATGAGGCCACGCTTC 62806 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || || ||||| || ||||| ||||| |||||||| || | || || Sbjct 62805 TTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 62746 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | || ||||| | |||| | |||| |||||| ||| | |||| || Sbjct 62745 GCAACCAGACGCTCGGCAAAGGTCGATTGCTTGTCGGAAATCCACTTCAGTGCCCAATCC 62686 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT----TTCTCTTTTTC 17220 || || | || ||||| || || || | || | || | | | | || Sbjct 62685 GCCTTACGTTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGG-- 62628 Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 | | |||| || || |||||||||||||| ||| | || ||||| |||||||| Sbjct 62627 CGG--GGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTC 62570 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA 17340 ||| ||||| || ||||| ||||| || || |||||| |||||||| | |||| Sbjct 62569 CATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTGCCTGAACTTCGTTGGAGAA 62510 Query 17341 TCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || || | || || || || ||||| ||||| Sbjct 62509 ACGCTCTACGAGGTTCTCATTTACGATACCGTC 62477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517487900134920