Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2640 141 1e-28 seq1717 132 5e-26 >seq2640 Length=24278 Score = 141 bits (156), Expect = 1e-28 Identities = 293/434 (68%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || |||||| || | ||||| || | |||||||||||||||||| || || | Sbjct 17609 CAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGA 17550 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || || || || | |||||| || ||||| || || || || ||||| Sbjct 17549 CCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAG 17490 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 |||||||| |||| || || || | || || || || | || | | || | | Sbjct 17489 ATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTCGGAA 17430 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| || |||| ||||| || | || || || || || || | || | Sbjct 17429 ATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGCATCG 17370 Query 16442 AACAAT----TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 |||| | | | || | | | ||| | ||| ||||| || |||| ||| Sbjct 17369 AACAGTCGGGTACGCTCGG--CGGGGTCCCGAATGTAT--GTATCGATGAGTAGCGAGTA 17314 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 | |||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct 17313 TGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGC 17254 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| ||||| | | || || || | ||||||||||| ||||||||||| || Sbjct 17253 TGCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGC 17194 Query 16618 AGCAAAAAACGCCA 16631 ||| || || |||| Sbjct 17193 AGCGAAGAAAGCCA 17180 >seq1717 Length=72410 Score = 132 bits (146), Expect = 5e-26 Identities = 291/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || |||||| || | || || || | |||||| || |||||||| ||||| | Sbjct 62886 CAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGA 62827 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || || ||||| | |||||| || ||||| || || || || ||||| Sbjct 62826 CCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAG 62767 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 |||||||| |||| || || || | | || || || | || | | || | | Sbjct 62766 ATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGTCGATTGCTTGTCGGAA 62707 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| || |||| || || || |||| || || || || || | || | Sbjct 62706 ATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAGCATCG 62647 Query 16442 AACAAT----TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 |||| | | | || | | | ||| | ||| ||||| || |||| ||| Sbjct 62646 AACAGTCGGGTACGCTCGG--CGGGGTCCCGAATGTAT--GTATCGATGAGTAGCGAGTA 62591 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 | |||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct 62590 TGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGC 62531 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | || ||||| | | || || || | ||||||||||| ||||||||||| || Sbjct 62530 TGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAAGC 62471 Query 16618 AGCAAAAAACGCCA 16631 |||||| || |||| Sbjct 62470 AGCAAAGAAAGCCA 62457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511357383687080