Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1717 109 7e-19 seq2640 87.8 2e-12 >seq1717 Length=72410 Score = 109 bits (120), Expect = 7e-19 Identities = 364/564 (65%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| | ||||| || | || || | |||||||| || || Sbjct 62890 CAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGT 62831 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || || ||||| ||||||||||| || | ||| || |||| || || || ||||| || Sbjct 62830 AAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAA 62771 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG 24310 ||| || || || || || || ||||||| || | ||| || | || | | || Sbjct 62770 GAAGATACCCTCCACAGCGGCGAAGGCAACCAGAC--GCTCGGCAAAGGTCGATTGCTTG 62713 Query 24311 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | |||||||| | |||||||| ||||| ||| | || || || ||||| | | Sbjct 62712 TCGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACA 62653 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 |||| || || | | || || || |||||||| || | || Sbjct 62652 GCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAG 62593 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 || | || || || ||||| || || || || || |||||||| || | |||||| Sbjct 62592 TATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCC 62533 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| | | || || ||| | | || ||||| || || ||||| Sbjct 62532 GCTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAA 62473 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT----TT 24601 || ||||| || |||| || || ||||||| |||| || || | || Sbjct 62472 GCAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGT-TGTCATTCATCCTGTT 62414 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 |||| || | | ||| ||||| | |||| ||||| | ||||| || || || || Sbjct 62413 CGTCCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTC 62354 Query 24662 TGCCTTTTTATACATATTCCAGAT 24685 |||||||| ||||| | |||||| Sbjct 62353 GGCCTTTTTGTACATTTGCCAGAT 62330 >seq2640 Length=24278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| | || || || | || || | ||||||||| || || Sbjct 17613 CAAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGT 17554 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || |||||||| || ||||||||||| | ||| || || | || || || ||||| || Sbjct 17553 AAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAA 17494 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG--CGC-TGTC 24307 ||| || || || || || || ||||||| || | || || | | || |||| Sbjct 17493 GAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTC 17434 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||||| | |||||||||||||| || | || || || ||||| | ||| Sbjct 17433 GGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGC 17374 Query 24368 AT 24369 || Sbjct 17373 AT 17372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593655407463120